Input parameters:

  Query = AT1G24130.1 (Len=415)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G24130.1, Len=415):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGLLPCSCPLPCNETRSECETKSTHHQSESSTSSSLLSQPSLPLVPSLSFQHQSSSVDHHCLATLKDKSSYVSSLAVSDK 80  
WD40-rpts                     (___________________WD 1__________________)(________________WD 2_

Query       81 LLYTGSSNSEIRVWPREPPFSPEYSTGDDRNVVANGNGGVKSLVILGDKLISAHQDHKIRVWKIIDESNRRGQKYKCVAT 160 
WD40-rpts      ______________)           (________________WD 3_______________)(________________

Query      161 LPTMNDRFKTLFSSKSYVEVRRHKKCTWVHHVDAVSSLALSQDGSLLYSASWDRSFKIWRTSDFKCLDSIEKAHDDAINA 240 
WD40-rpts      _WD 4________________)_________________WD 5________________)   (________________

Query      241 IVVSKDGFVYTGSADKKIKVWNKKDKKHSLVATLTKHLSAVNALAISEDGKVLYSGACDRSILVWERLINGDDEELHMSV 320 
WD40-rpts      _WD 6________________)     (_________________WD 7________________)           (__

Query      321 VGALRGHRKAIMCLAVASDLVLSGSADKSLRVWRRGLMEKEGYSCLAVLEGHTKPVKSLAVSVSDSDSNSDYSCMVYSGS 400 
WD40-rpts      ______________WD 8_______________)(_________________________WD 9________________

Query      401 LDLSLKVWNLRVSSI 415 
WD40-rpts      ________)      

9 WD40-repeats found in QUERY=AT1G24130.1 (Len=415):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    16-58       5.89  358.17  0.00093       22.5%     38.41
  WD 2:  Seg  4    59-95       7.36  418.78  0.00014       37.5%     49.03
  WD 3:  Seg  8   107-143      6.81  396.16  0.00028       27.5%     51.38
  WD 4:  Seg 12   144-182      6.58  386.47  0.00039        7.5%     43.82
  WD 5:  Seg 15   182-220      8.81  478.62  2.2e-05       32.5%     50.37
  WD 6:  Seg 19   224-262      7.28  415.58  0.00016       32.5%     50.80
  WD 7:  Seg 22   268-306      9.14  492.07  1.5e-05       40.0%     48.54
  WD 8:  Seg 26   318-354      6.79  395.14  0.00029       25.0%     42.55
  WD 9:  Seg 29   355-409      7.84  438.51  7.7e-05       42.5%     55.05

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   16-58     RS-------ECETKS-THHQSESSTSSSLLSQPSLP--------LVPSLSFQHQSSSVD
   WD 2   59-95     -H-------HCLATL-KDKSS---YVSSLAVS--DK--------LLYTGSSNSEIRVWP
   WD 3  107-143    -G-------DDRNVV-ANGNG---GVKSLVILGD----------KLISAHQDHKIRVWK
   WD 4  144-182    II-------D-ESNR-RGQKY---KCVATLPTMNDR--------FKTLFSSKSYVEVRR
   WD 5  182-220    -R-------HKKCTW-VHHVD---AVSSLALSQDGS--------LLYSASWDRSFKIWR
   WD 6  224-262    -F-------KCLDSIEKAHDD---AINAIVVSKDG---------FVYTGSADKKIKVWN
   WD 7  268-306    -H-------SLVATL-TKHLS---AVNALAISEDGK--------VLYSGACDRSILVWE
   WD 8  318-354    -M-------SVVGAL-RGHRK---AIMCLAVASD----------LVLSGSADKSLRVWR
   WD 9  355-409    RGLMEKEGYSCLAVL-EGHTK---PVKSLAVSVSDSDSNSDYSCMVYSGSLDLSLKVWN

   WD40 Template    TG-------ECLRTL-SGHTS---GVTSVSFSPDGK--------RLVSGSEDGTIKVWD