Input parameters:

  Query = AT1G24530.1 (Len=418)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G24530.1, Len=418):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRVISKLFDSDRRRIPKSPKHLDSGESATSSSSLSDVTTGSSSLHSSLSLQTLPSVPSLQKIPSTTVTVSHSVTSSFKLR 80  
WD40-rpts      (_______________WD 1_______________)____________________WD 2____________________

Query       81 ERSLPVTCLAVNGGYLFAVSGHEVSIYDRDMCAHLDTFNGQDPFSGTVKSVGFSGEKIFTAHQDGKIGVWKLTAKSGYKQ 160 
WD40-rpts      )                              (_________________WD 3_________________)         

Query      161 LTTLPTLNDRLRRFALPKNYVQVRRHKKRLWIEHADAVTALAVSDGFIYSVSWDKTLKIWRASDLRCKESIKAHDDAVNA 240 
WD40-rpts                                (_______________WD 4______________)   (_______________

Query      241 IAVSTNGTVYTGSADRRIRVWAKPTGEKRHTLVATLEKHKSAVNALALNDDGSVLFSGSCDRSILVWEREDTSNYMAVRG 320 
WD40-rpts      _WD 5________________)       (_________________WD 6________________)(___________

Query      321 ALRGHDKAILSLFNVSDLLLSGSADRTVRIWRRGPDSSYSCLEVLSGHTKPVKSLAAVREKELDDVVSIISGSLDGEVKC 400 
WD40-rpts      ________WD 7___________________)      (___________________WD 8__________________

Query      401 WKVSVTKPDNSFYTNLVQ 418 
WD40-rpts      _)                

8 WD40-repeats found in QUERY=AT1G24530.1 (Len=418):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-36       5.39  337.27  0.00177       10.0%      1.77
  WD 2:  Seg  2    36-81       4.89  316.78  0.00335       17.5%     28.31
  WD 3:  Seg  9   112-151      6.58  386.42  0.00039       27.5%     38.23
  WD 4:  Seg 16   187-221      6.38  378.27  0.00050       27.5%     49.41
  WD 5:  Seg 20   225-262      8.29  457.03  4.3e-05       27.5%     51.19
  WD 6:  Seg 24   270-308      9.37  501.72  1.1e-05       37.5%     47.40
  WD 7:  Seg 27   309-352      7.05  405.82  0.00021       30.0%     42.32
  WD 8:  Seg 30   359-402      8.45  463.52  3.5e-05       40.0%     53.58

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-36     ----------------MRVISKLFDSDRRR-IPKSPKH-----LDSGESATSSSSLSD
   WD 2   36-81     DVT------TGSSSLHSSLSLQTLPSVPSL-QKIPSTT-----VTVSHSVTSSFKLRE
   WD 3  112-151    -CA------H------LDTFNGQDPFSGTVKSVGFSGE-----KIFTAHQDGKIGVWK
   WD 4  187-221    K---------------KRLWIEHADAVTAL-AVSDG-------FIYSVSWDKTLKIWR
   WD 5  225-262    -LR------C------KESIKAHDDAVNAI-AVSTNGT------VYTGSADRRIRVWA
   WD 6  270-308    -HT------L------VATLEKHKSAVNAL-ALNDDGS-----VLFSGSCDRSILVWE
   WD 7  309-352    REDTSNYMAV------RGALRGHDKAILSL-FNVSD-------LLLSGSADRTVRIWR
   WD 8  359-402    -YS------C------LEVLSGHTKPVKSL-AAVREKELDDVVSIISGSLDGEVKCWK

   WD40 Template    TGE------C------LRTLSGHTSGVTSV-SFSPDGK-----RLVSGSEDGTIKVWD