Input parameters:
Query = AT1G26130.2 (Len=1185)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (AT1G26130.2, Len=1185):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MATVSGRRRKRKIQLSKLFTLTGAKACFKPDHSKIGRSGFSRVVFCNQPDSPEAESRNYCDNYVRTTKYTLATFLPKSLF 80
WD40-rpts
Query 81 EQFRRVANFYFLVVGILSFTPLAPYTAVSAIVPLTFVILATMFKEGVEDWRRKQQDIEVNNRKVRVHRGNGNFDLREWKT 160
WD40-rpts
Query 161 LRVGDILKVEKNEFFPADLVLLSSSYEDAVCYVETMNLDGETNLKLKQGLEVTLSLREELNFRDFEAFIKCEDPNANLYS 240
WD40-rpts
Query 241 FVGTMDLKGEKYPLSPQQLLLRGSKLRNTDYIYGVVIFTGPDTKVVQNSTDPPSKRSMIERKMDKIIYLMFLMVFSLAFF 320
WD40-rpts
Query 321 GSVLFGIWTRDDFQNGVMERWYLKPDDSSIFFDPKRAPMAAIYHFLTALMLNSYFIPISLYVSIEIVKVLQSIFINQDIH 400
WD40-rpts
Query 401 MYYEEADKPAHARTSNLNEELGQVGTILSDKTGTLTCNSMEFIKCSIAGTAYGRGVTEVEMAMDKRKGSALVNQSNGNST 480
WD40-rpts
Query 481 EDAVAAEPAVKGFNFRDERIMDGNWVTETHADVIQKFFQLLAVCHTVIPEVDEDTGKISYEAESPDEAAFVIAARELGFE 560
WD40-rpts
Query 561 FFTRTQTTISVRELDLVTGERVERLYSVLNVLEFSSSKKRMSVIVQDQDGKLLLLCKGADSVMFERLSESGRKYEKETRD 640
WD40-rpts
Query 641 HVNEYADAGLRTLILAYRELDENEYEVFTERISEAKNSVSADREALIDEVTEKIEKNLVLLGATAVEDKLQNGVPDCINK 720
WD40-rpts (_______________________________________WD 1_____________________________
Query 721 LAQAGIKIWVLTGDKMETAINIGFACSLLRRDMKQIIINLETPEIQQLEKSGEKDAIAAALKENVLHQITSGKAQLKASG 800
WD40-rpts _________)
Query 801 GNAKAFALIIDGKSLAYALEEDMKGIFLELAIGCASVICCRSSPKQKALVTRLVKTGSGQTTLAIGDGANDVGMLQEADI 880
WD40-rpts
Query 881 GVGISGVEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRISKMICYFFYKNITFGFTLFLYEAYTSFSATPAYNDWYLS 960
WD40-rpts
Query 961 LYSVFFTSLPVICLGIFDQDVSAPFCLKFPVLYQEGVQNLLFSWRRILSWMFHGFCSAIIIFFLCKTSLESQAFNHEGKT 1040
WD40-rpts
Query 1041 AGRDILGGTMYTCVVWVVSLQMVLTISYFTLIQHVVVWGSVVIWYLFLMVYGSLPIRMSTDAYMVFLEALAPAPSYWITT 1120
WD40-rpts
Query 1121 LFVVLSTMMPYFIFSAIQMRFFPMSHGTVQLLRYEDQCSNSGNFEMGRQGSVRPTLVMRSHQPES 1185
WD40-rpts
1 WD40-repeats found in QUERY=AT1G26130.2 (Len=1185):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 20 648-730 2.90 234.52 0.04218 35.0% 10.78
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 648-730 AG--LRTLILAYRELDENEYEVFTERISEAKNSVSADREALIDEVTEKIEKNLVLLGATAVEDKLQNGVPDCINKLAQAGIKIWV
WD40 Template TGECLRTLSGHTSGVT----------------SVSFS--------------PDGKRLVSGSED----G-----------TIKVWD