Input parameters:

  Query = AT1G26230.1 (Len=611)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G26230.1, Len=611):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAFSQAALSALPLSDRTFRKKPSSSSSSSPNFVLRVRAAAKEVHFNRDGSVTKKLQAGADMVAKLLGVTLGPKGRNVVLQ 80  
WD40-rpts                                                                                      

Query       81 NKYGPPRIVNDGETVLKEIELEDPLENVGVKLVRQAGAKTNDLAGDGSTTSIILAHGLITEGIKVISAGTNPIQVARGIE 160 
WD40-rpts                                                                                      

Query      161 KTTKALVLELKSMSREIEDHELAHVAAVSAGNDYEVGNMISNAFQQVGRTGVVTIEKGKYLVNNLEIVEGMQFNRGYLSP 240 
WD40-rpts                                                                                      

Query      241 YFVTDRRKREAEFHDCKLLLVDKKITNPKDMFKILDSAVKEEFPVLIVAEDIEQDALAPVIRNKLKGNLKVAAIKAPAFG 320 
WD40-rpts                                                                                      

Query      321 ERKSHCLDDLAIFTGATVIRDEMGLSLEKAGKEVLGTAKRVLVTKDSTLIVTNGFTQKAVDERVSQIKNLIENTEENFQK 400 
WD40-rpts                                                  (___________________________________

Query      401 KILNERVARLSGGIAIIQVGALTQVELKDKQLKVEDALNATKSAIEEGIVVGGGCALLRLATKVDRIKETLDNTEQKIGA 480 
WD40-rpts      ____________________________________WD 1________________________________________

Query      481 EIFKKALSYPIRLIAKNADTNGNIVIEKVLSNKNTMYGYNAAKNQYEDLMLAGIIDPTKVVRCCLEHASSVAQTFLTSDC 560 
WD40-rpts      _______________________________)                                                

Query      561 VVVEIKEIKPRPIINPPLPTSSPATSSMFPDRKLPRFPQIMPRTRSHFPRK 611 
WD40-rpts                                                         

1 WD40-repeats found in QUERY=AT1G26230.1 (Len=611):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 12   365-512      3.29  250.44  0.02595       20.0%     28.70

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  365-512    KDSTLIVTNGFTQKAVDERVSQIKNLIENTEENFQKKILNERVARLSGGIAIIQVGALTQVELKDKQLKVEDALNATKSAIEEGIVVGGGCALLRLATKVDRIKETLDNTEQKIGAEIFKKALSYPIRLIAKNADTNGNIVIEKVLSN

   WD40 Template    TGECLRTLSGHT-----------------------------------SGVTSVSFSPDGK-----------------------RLVSGS-------------------E---------------------------DGTIKV----WD