Input parameters:

  Query = AT1G27470.1 (Len=810)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G27470.1, Len=810):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFEYRCSSIDWKPSPVVALATSADGSQVAAAREDGSLELWLVSPGASSWHCQLIIHGDPKSRISHLAWFGTGSKGSSSAR 80  
WD40-rpts       (_________________WD 1_________________)               (________________WD 2___

Query       81 LFSSSIDGSISEWDLFDLKQKVVLDSIGFSIWQIALAPISIEAESKEAKLIQNGYLSEKSDDEEESGVEDDSELDELDEK 160 
WD40-rpts      _____________)   (_________________WD 3________________)      (_________________

Query      161 VEALDRHLAAACDDGCVRIYYISESDKLTYYRSLPRVTGRALSVTWSADAQRIFSGSSDGLIRCWDANLCHEVYRITVGL 240 
WD40-rpts      WD 4________________)     (_________________WD 5_________________)           (__

Query      241 GGLGNGSELCIWSLLSLRYGVLVSGDSTGSVQFWDSQHGTLLQAHSNHKGDVNALAASPSHNRVFSAGADGQVILYKLSG 320 
WD40-rpts      ______________WD 6________________)   (_________________WD 7________________)   

Query      321 GTSRSQDFKPSSAQKWDYIGCVRAHTHDIRALTVAVPISWEGSIPDRNAKVTSPKQRRKEPAGFSYHKWAHLGVPMLISA 400 
WD40-rpts                     (_________________WD 8________________)_______________WD 9_______

Query      401 GDDAKLYAYSVQEFTKFPPHDICPAPQRVPMQMVHNTVFNQTSLLLVQDSCSLDILRIHISNDSSGRVSTKPLVRVKSKD 480 
WD40-rpts      _________)(_____________________WD10____________________)   (___________________

Query      481 ARKIICSAISNTGSLFAYSDQVRPSLFELKKNKIGKNPWSANRKRLPNLPFAHSMVFSCDCSRLIIAGHDRRIYIVDVGS 560 
WD40-rpts      __WD11_____________________)  (_____________________WD12____________________)   

Query      561 MELLHSFTPRQEGQEGESPPHEPPITKLYTSSNDDWLAAINCFGDIYVFNLETQRQHWFISRLDGASVAAAGFHPRDNNV 640 
WD40-rpts             (___________________WD13__________________)   (__________________WD14____

Query      641 IVISTSSNQVFALDVEARELSKWSLLQTFCLPKSYQNFPGEVVGLSFSPSPCSSSVIIYSSRAKCLIEFGKPAEQDEDTD 720 
WD40-rpts      _____________)                                                                  

Query      721 TPCNLSEKLEGKLASISMKLGNGAQKRRLEEYQKESKSNKRKKFEMVTSKHPVLYLRHLSKSAILVIEKPWMEVIKNLDT 800 
WD40-rpts                                                                                      

Query      801 QPVHRHIFGT 810 
WD40-rpts                

14 WD40-repeats found in QUERY=AT1G27470.1 (Len=810):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     2-41       8.45  463.84  3.5e-05       22.5%     56.32
  WD 2:  Seg  6    57-94       7.26  414.40  0.00016       27.5%     39.76
  WD 3:  Seg  9    98-136      6.69  391.09  0.00033        7.5%     44.76
  WD 4:  Seg 13   143-181      6.38  378.27  0.00050       10.0%     42.32
  WD 5:  Seg 16   187-226     10.55  550.40  2.4e-06       40.0%     45.80
  WD 6:  Seg 20   238-275      6.16  369.02  0.00066       27.5%     32.00
  WD 7:  Seg 23   279-317      9.06  488.92  1.6e-05       27.5%     56.07
  WD 8:  Seg 28   336-374      4.80  313.13  0.00375        7.5%     39.76
  WD 9:  Seg 31   372-410      6.53  384.28  0.00041        7.5%     42.25
  WD10:  Seg 35   411-457      3.60  263.51  0.01737       15.0%     32.40
  WD11:  Seg 38   461-508      4.38  295.69  0.00643       10.0%     51.59
  WD12:  Seg 42   511-557      7.65  430.63  9.8e-05       25.0%     46.54
  WD13:  Seg 46   568-610      7.14  409.40  0.00019       20.0%     43.03
  WD14:  Seg 49   614-654      4.86  315.48  0.00348       15.0%     53.88

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    2-41     FEY---------RCSSIDWKPS-PVVALATSADGSQ-VAAAREDGSLELWL
   WD 2   57-94     GDP-----------KSRISHLA-WFGTGSKGSSSAR-LFSSSIDGSISEWD
   WD 3   98-136    -LK---------QKVVLDSIGF-SIWQIALAPISIE-AESKEAKLIQNGYL
   WD 4  143-181    -EE---------ESGVEDDSEL-DELDEKVEALDRH-LAAACDDGCVRIYY
   WD 5  187-226    KLT---------YYRSLPRVTG-RALSVTWSADAQR-IFSGSSDGLIRCWD
   WD 6  238-275    VG----------LGGLGNGSEL-CIWSL-LSLRYGV-LVSGDSTGSVQFWD
   WD 7  279-317    -GT---------LLQAHSNHKG-DVNALAASPSHNR-VFSAGADGQVILYK
   WD 8  336-374    -WD---------YIGCVRAHTH-DIRALTVAVPISW-EGSIPDRNAKVTSP
   WD 9  372-410    -TS---------PKQRRKEPAG-FSYHKWAHLGVPM-LISAGDDAKLYAYS
   WD10  411-457    VQEFTKFPPHDICPAPQRVPMQ-MVHNTVFNQTSLL-LVQD--SCSLDILR
   WD11  461-508    SNDSSGRVSTKPLVRVKSKDAR-KIICSAISNTGSL-FAYSD-QVRPSLFE
   WD12  511-557    KNK--IGKNPWSANRKRLPNLP-FAHSMVFSCDCSR-LIIAGHDRRIYIVD
   WD13  568-610    TPR------QEGQEGESPPHEP-PITKLYTSSNDDW-LAAINCFGDIYVFN
   WD14  614-654    -QR---------QHWFISRLDGASVAAAGFHPRDNNVIVISTSSNQVFALD

   WD40 Template    TGE---------CLRTLSGHTS-GVTSVSFSPDGKR-LVSGSEDGTIKVWD