Input parameters:

  Query = AT1G27840.1 (Len=450)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G27840.1, Len=450):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MWEAIKDRETGRIRSNSFANRFKSRRILSLQLSNRKDFVSPHRGSVNSLQVDLTEGRYLLSGAADGSAAVFDVQRATDYE 80  
WD40-rpts                                      (_________________WD 1_________________)        

Query       81 ASGLIAKHKCIFTVDKQHENGHKYAISSAIWYPIDTGLFITGSFDHYLKVWDTNTAQAVVDFKMPGKVYRTAMSSMAMSH 160 
WD40-rpts                    (________________WD 2________________)(___________________WD 3____

Query      161 TLIAAGTEDVQVRLCDIASGAFSHTLSGHRDGVMSVEWSTSSEWVLYTGGCDGAIRFWDIRRAGCFRVLDQSQTQLGFRP 240 
WD40-rpts      _______________)   (_________________WD 4_________________)   (________________W

Query      241 PILKRTAVGSKLSSVAKSSLGGQNRLKTLQSKQTGSQSVKGSSSAKASVEKSRQKRIHPGMLSTLDRATAHYGAVTGLKA 320 
WD40-rpts      D 5_______________)   (_________________WD 6________________)(_________________W

Query      321 TNDGMYLLSAGSDSRIRLWDIESGRNTLVNFETGRIQTNKGIQLDTSDDPALVFVPCMKTVKAFGMWSGRTTLMLRGHYE 400 
WD40-rpts      D 7________________)     (_________________WD 8_________________)   (___________

Query      401 SVNTCCFNSNDQELYTSGSDRQILVWSPGGTVEDEMVQDEVAEDKDNWSD 450 
WD40-rpts      ______WD 9________________)                       

9 WD40-repeats found in QUERY=AT1G27840.1 (Len=450):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    33-72       8.15  451.13  5.2e-05       30.0%     54.94
  WD 2:  Seg  9    95-132      7.76  435.05  8.5e-05       30.0%     43.63
  WD 3:  Seg 12   133-176      7.72  433.60  8.9e-05       17.5%     49.53
  WD 4:  Seg 16   180-219      8.96  484.66  1.8e-05       45.0%     56.18
  WD 5:  Seg 20   223-259      5.33  335.01  0.00190       20.0%     48.59
  WD 6:  Seg 24   263-301      8.42  462.32  3.7e-05       27.5%     44.76
  WD 7:  Seg 28   302-340      9.08  489.81  1.6e-05       30.0%     48.46
  WD 8:  Seg 31   346-385      6.44  380.68  0.00046       15.0%     52.32
  WD 9:  Seg 35   389-427      9.33  499.98  1.1e-05       27.5%     56.89

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   33-72     -SNRKD----FVSPHRGSVNSLQV-DLT-EGRY-LLSGAADGSAAVFD
   WD 2   95-132    ---DKQ----HENGHKYAISSAIW-Y-PIDTGL-FITGSFDHYLKVWD
   WD 3  133-176    TNTAQAVVDFKMPGKVYRTAMSSM-A-M-SHTL-IAAGTEDVQVRLCD
   WD 4  180-219    -GAFSH----TLSGHRDGVMSVEW-S-T-SSEWVLYTGGCDGAIRFWD
   WD 5  223-259    -AGCFR----VLDQSQTQLGF--R-P-P-ILKR-TAVGSKLSSVAKSS
   WD 6  263-301    -QNRLK----TLQSKQTGSQSVKG-S-S-SAKA-SVEKSRQKRIHPGM
   WD 7  302-340    -LSTLD----RATAHYGAVTGLKA-T-N-DGMY-LLSAGSDSRIRLWD
   WD 8  346-385    -NTLVN----FETGRIQTNKGIQLDT-S-DDPA-LVFVPCMKTVKAFG
   WD 9  389-427    -GRTTL----MLRGHYESVNTCCF-N-S-NDQE-LYTSGSDRQILVWS

   WD40 Template    TGECLR----TLSGHTSGVTSVSF-S-P-DGKR-LVSGSEDGTIKVWD