Input parameters:

  Query = AT1G27840.2 (Len=393)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G27840.2, Len=393):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MWEAIKDRETGRIRSNSFANRFKSRRILSLQLSNRKDFVSPHRGSVNSLQVDLTEGRYLLSGAADGSAAVFDVQRATDYE 80  
WD40-rpts                                      (_________________WD 1_________________)        

Query       81 AVVDFKMPGKVYRTAMSSMAMSHTLIAAGTEDVQVRLCDIASGAFSHTLSGHRDGVMSVEWSTSSEWVLYTGGCDGAIRF 160 
WD40-rpts      (_________________WD 2________________)   (_________________WD 3________________

Query      161 WDIRRAGCFRVLDQSQTQLGFRPPILKRTAVGSKLSSVAKSSLGGQNRLKTLQSKQTGSQSVKGSSSAKASVEKSRQKRI 240 
WD40-rpts      _)   (________________WD 4_______________)   (_________________WD 5_____________

Query      241 HPGMLSTLDRATAHYGAVTGLKATNDGMYLLSAGSDSRIRLWDIESGRNTLVNFETGRIQTNKGIQLDTSDDPALVFVPC 320 
WD40-rpts      ___)(_________________WD 6________________)     (_________________WD 7__________

Query      321 MKTVKAFGMWSGRTTLMLRGHYESVNTCCFNSNDQELYTSGSDRQILVWSPGGTVEDEMVQDEVAEDKDNWSD 393 
WD40-rpts      _______)   (_________________WD 8________________)                       

8 WD40-repeats found in QUERY=AT1G27840.2 (Len=393):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    33-72       8.17  452.08  5.0e-05       30.0%     54.84
  WD 2:  Seg  7    81-119      7.64  430.06  9.9e-05       15.0%     51.20
  WD 3:  Seg 11   123-162      9.01  486.90  1.7e-05       45.0%     56.00
  WD 4:  Seg 15   166-202      5.37  336.68  0.00181       25.0%     51.28
  WD 5:  Seg 19   206-244      8.56  468.41  3.0e-05       27.5%     43.85
  WD 6:  Seg 22   245-283      9.18  493.95  1.4e-05       30.0%     49.51
  WD 7:  Seg 26   289-328      6.54  384.86  0.00040       15.0%     53.56
  WD 8:  Seg 30   332-370      9.37  501.91  1.1e-05       27.5%     56.57

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   33-72     SNRKDFVSPHRGSVNSLQV-DLTE-GRY-LLSGAADGSAAVFD
   WD 2   81-119    AVVDFKMPGKVYRTAMSSM-A-MS-HTL-IAAGTEDVQVRLCD
   WD 3  123-162    GAFSHTLSGHRDGVMSVEW-S-TS-SEWVLYTGGCDGAIRFWD
   WD 4  166-202    AGCFRVLDQS---QTQLGF-R-PPILKR-TAVGSKLSSVAKSS
   WD 5  206-244    QNRLKTLQSKQTGSQSVKG-S-SS-AKA-SVEKSRQKRIHPGM
   WD 6  245-283    LSTLDRATAHYGAVTGLKA-T-ND-GMY-LLSAGSDSRIRLWD
   WD 7  289-328    NTLVNFETGRIQTNKGIQLDT-SD-DPA-LVFVPCMKTVKAFG
   WD 8  332-370    GRTTLMLRGHYESVNTCCF-N-SN-DQE-LYTSGSDRQILVWS

   WD40 Template    GECLRTLSGHTSGVTSVSF-S-PD-GKR-LVSGSEDGTIKVWD