Input parameters:

  Query = AT1G27840.3 (Len=451)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G27840.3, Len=451):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MWEAIKDRETGRIRSNSFANRFKSRRILSLQLSNRKDFVSPHRGSVNSLQVDLTEGRYLLSGAADGSAAVFDVQRATDYE 80  
WD40-rpts                                      (_________________WD 1_________________)        

Query       81 ASGLIAKHKCIFTVDKQHENGHKYAISSAIWYPIDTGLFITGSFDHYLKVWDTNTAQAVVDFKMPGKVYRTAMSSMAMSH 160 
WD40-rpts                    (________________WD 2________________)(___________________WD 3____

Query      161 TLIAAGTEDVQVRLCDIASGAFSHTLSGHRDGVMSVEWSTSSEWVLYTGGCDGAIRFWDIRRAGCFRVLDQSQTQLGFRP 240 
WD40-rpts      _______________)   (_________________WD 4_________________)   (________________W

Query      241 PILKRTAVGSKLSSVAKSSLGGQNRLKTLQSKQTGSQSVKGSSSAKASVEKSRQKRIHPGMLSTLDRATAHYGAVTGLKA 320 
WD40-rpts      D 5_______________)   (_________________WD 6________________)(_________________W

Query      321 TNDGMYLLSAGSDSRIRLWDIESGRNTLVNFETGRIQTNKGIQLDTSDDPALVFVPCMKTVKVAFGMWSGRTTLMLRGHY 400 
WD40-rpts      D 7________________)(____________________WD 8____________________)   (__________

Query      401 ESVNTCCFNSNDQELYTSGSDRQILVWSPGGTVEDEMVQDEVAEDKDNWSD 451 
WD40-rpts      _______WD 9________________)                       

9 WD40-repeats found in QUERY=AT1G27840.3 (Len=451):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    33-72       8.25  455.35  4.5e-05       30.0%     51.82
  WD 2:  Seg  9    95-132      7.73  434.06  8.8e-05       30.0%     43.36
  WD 3:  Seg 12   133-176      7.83  438.20  7.7e-05       17.5%     51.89
  WD 4:  Seg 16   180-219      8.94  483.88  1.9e-05       45.0%     55.34
  WD 5:  Seg 20   223-259      5.25  331.41  0.00213       25.0%     42.36
  WD 6:  Seg 23   263-301      8.07  448.09  5.7e-05       27.5%     43.65
  WD 7:  Seg 27   302-340      9.14  492.24  1.4e-05       30.0%     44.99
  WD 8:  Seg 30   341-386      6.39  378.51  0.00049       10.0%     47.64
  WD 9:  Seg 33   390-428      9.31  499.32  1.2e-05       27.5%     54.99

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   33-72     -SN------RKD----FVSPHRGSVNSLQVDLT-E-GR-YLLSGAADGSAAVFD
   WD 2   95-132    ---------DKQ----HENGHKYAISSAIWY-PID-TG-LFITGSFDHYLKVWD
   WD 3  133-176    TNT------AQAVVDFKMPGKVYRTAMSSMA-M-S-HT-LIAAGTEDVQVRLCD
   WD 4  180-219    -GA------FSH----TLSGHRDGVMSVEWS-T-S-SEWVLYTGGCDGAIRFWD
   WD 5  223-259    -AG------CFR----VLDQS---QTQLGFR-P-PILK-RTAVGSKLSSVAKSS
   WD 6  263-301    -QN------RLK----TLQSKQTGSQSVKGS-S-S-AK-ASVEKSRQKRIHPGM
   WD 7  302-340    -LS------TLD----RATAHYGAVTGLKAT-N-D-GM-YLLSAGSDSRIRLWD
   WD 8  341-386    IESGRNTLVNFE----TGRIQTNKGIQLDTS-D-D-PA-LVFVPCMKTVKVAFG
   WD 9  390-428    -GR------TTL----MLRGHYESVNTCCFN-S-N-DQ-ELYTSGSDRQILVWS

   WD40 Template    TGE------CLR----TLSGHTSGVTSVSFS-P-D-GK-RLVSGSEDGTIKVWD