Input parameters:

  Query = AT1G29260.1 (Len=317)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G29260.1, Len=317):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPVFKAPFNGYSVKFSPFYESRLAVATAQNFGILGNGRIHVLELAPGAPGVTESVSYDTADAVYDVCWSESHDSVLIAAI 80  
WD40-rpts      (_______________WD 1_______________)             (_________________WD 2_________

Query       81 GDGSVKIYDTALPPPSNPIRSFQEHAREVQSVDYNPTRRDSFLTSSWDDTVKLWAMDRPASVRTFKEHAYCVYQAVWNPK 160 
WD40-rpts      ________)      (_________________WD 3_________________)   (_________________WD 4

Query      161 HGDVFASASGDCTLRIWDVREPGSTMIIPAHDFEILSCDWNKYDDCILATSSVDKTVKVWDVRSYRVPLAVLNGHGYAVR 240 
WD40-rpts      _________________)   (_________________WD 5_________________)(__________________

Query      241 KVKFSPHRRSLIASCSYDMSVCLWDYMVEDALVGRYDHHTEFAVGIDMSVLVEGLMASTGWDELVYVWQQGMDPRAS 317 
WD40-rpts      _WD 6___________________)    (_________________WD 7_________________)        

7 WD40-repeats found in QUERY=AT1G29260.1 (Len=317):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-36       3.32  251.64  0.02501       17.5%     30.97
  WD 2:  Seg  4    50-89       7.25  414.31  0.00016       22.5%     56.46
  WD 3:  Seg  8    96-135      8.28  456.62  4.4e-05       27.5%     52.11
  WD 4:  Seg 12   139-178      8.34  459.27  4.0e-05       30.0%     55.68
  WD 5:  Seg 16   182-221      8.13  450.38  5.3e-05       27.5%     53.36
  WD 6:  Seg 20   222-265      7.98  444.28  6.4e-05       35.0%     47.46
  WD 7:  Seg 24   270-309      6.78  394.56  0.00030       17.5%     52.73

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-36     --------MPVFKAPFNGYSVKFSP-FYESR-LAVATAQNFGILGN
   WD 2   50-89     -GV---TESVSYDTADAVYDVCWSESHDS-V-LIAAIGDGSVKIYD
   WD 3   96-135    -SN---PIRSFQEHAREVQSVDYNP-TRRDS-FLTSSWDDTVKLWA
   WD 4  139-178    -PA---SVRTFKEHAYCVYQAVWNPKHGD-V-FASASGDCTLRIWD
   WD 5  182-221    -PG---STMIIPAHDFEILSCDWNKYDDC-I-LATSSVDKTVKVWD
   WD 6  222-265    VRSYRVPLAVLNGHGYAVRKVKFSP-HRR-SLIASCSYDMSVCLWD
   WD 7  270-309    -DA---LVGRYDHHTEFAVGIDMSV-LVEGL-MASTGWDELVYVWQ

   WD40 Template    TGE---CLRTLSGHTSGVTSVSFSP-DGK-R-LVSGSEDGTIKVWD