Input parameters:

  Query = AT1G29320.1 (Len=468)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G29320.1, Len=468):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPRVIPPENLGCPPFRALTFDSLGLIKVTEARGQERGIPTVVNTWGEMNASRSVLAASIDDRLRNPLLAVARKDGNVEVI 80  
WD40-rpts                                     (_______________WD 1_______________)             

Query       81 NPCNGDLHFSYSVFGDDGCSPEDNEISALHLFRKKIDDQTERSCTLLTCTKKGDVSLRSVKFPDAHGNSTDDASPKTWKA 160 
WD40-rpts                                                 (_______________WD 2_______________)(

Query      161 CGSGEILVGKVDGSENFSLFGGKRVEANIWDLEQCTKIWSAKCPPKNNLGIFTPTWFTSATFLSKDDHRKFVTGTKSHQV 240 
WD40-rpts      __________________WD 3_________________)   (__________________WD 4______________

Query      241 RLYDISTQRRPVLSFDFRETAITSIAEDPDGHTIYVGNASADLASFDIRTGKLLGSFLGKCSGSIRSVVRHPQHQVIASC 320 
WD40-rpts      ___)(___________________WD 5__________________)   (_________________WD 6________

Query      321 GLDRYLRVYDVKTRQLISAVFLKQHLTGLVFDSGFSGEETAVANTVAEAATEEKMTIMDQEDDETEKAPVKRKKSKKEKR 400 
WD40-rpts      _________)(______________________WD 7_____________________)   (_________________

Query      401 SREIVFEGEDDEENEDEIEKAPVKTKKSKKEKRSREKVSEGEEKDELRSKKTREHKKKTKIVKHNQED 468 
WD40-rpts      _______________WD 8_______________________________)                 

8 WD40-repeats found in QUERY=AT1G29320.1 (Len=468):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    32-67       5.46  340.22  0.00162       12.5%     21.10
  WD 2:  Seg  9   124-159      5.42  338.54  0.00170       17.5%     38.85
  WD 3:  Seg 13   160-200      5.24  331.21  0.00214       15.0%     40.68
  WD 4:  Seg 17   204-244      7.28  415.47  0.00016       17.5%     44.83
  WD 5:  Seg 20   245-287      8.67  472.81  2.6e-05       17.5%     55.95
  WD 6:  Seg 24   291-330      7.93  442.32  6.8e-05       30.0%     57.67
  WD 7:  Seg 28   331-379      4.97  320.03  0.00303       17.5%     42.50
  WD 8:  Seg 30   383-451      3.61  263.85  0.01719        7.5%     14.95

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   32-67     RG---Q--------ERGIPTV-VNTWGE--M-NASRSVLA----ASID---------DR---------------------LRNPL
   WD 2  124-159    -C---T----LLTCTKKGDVS-LRSVKF--P-DA---HGN----STDD---------AS---------------------PKTWK
   WD 3  160-200    AC---G----SGEILVGKVDG-SENFSL--FGGKRVEANI----WDLE---------QC---------------------TKIWS
   WD 4  204-244    -P---P----KNNLGIFTPTW-FTSATFLSK-DDHRKFVT----GTKS---------HQ---------------------VRLYD
   WD 5  245-287    ISTQRR----PVLSFDFRETA-ITSIAE--D-PDGHTIYV----GNAS---------AD---------------------LASFD
   WD 6  291-330    -G---K----LLGSFLGKCSGSIRSVVR--H-PQHQVIAS----CGLD---------RY---------------------LRVYD
   WD 7  331-379    VK---TRQLISAVFLKQHLTGLVFDSGF--S-GEETAVANTVAEAATE---------EK---------------------MTIMD
   WD 8  383-451    -D---E----TEKAPVKRKKS-KKEKRS--R-EIVFEGED----DEENEDEIEKAPVKTKKSKKEKRSREKVSEGEEKDELRSKK

   WD40 Template    TG---E----CLRTLSGHTSG-VTSVSF--S-PDGKRLVS----GSED---------GT---------------------IKVWD