Input parameters:

  Query = AT1G36070.1 (Len=418)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G36070.1, Len=418):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEQTKDDSDFEDDCETKKMETDTSAQEARNGKDIQGIQWEGFKYNRDEFRETRLKQYDNFVNILRPSSREKLDKEHGQVV 80  
WD40-rpts                                                                                      

Query       81 EKGKNFYDFQFNTRLVTSTIVHFQLRNLVWATSKHDVYLMQNYSLMHWSSLLQRGKEVLNVARSVTPTQKLPGLFSEPLS 160 
WD40-rpts        (_________________WD 1________________)   (_________________WD 2______________

Query      161 RVQVSSMAVKENLILLGGFDGELLCKCVNQPGVAFCTRLSTEDNAITNTVDIYRDPSGSLRLITANNDCKIRVFDAQSFT 240 
WD40-rpts      __)__________WD 3___________)   (___________________WD 4__________________)(____

Query      241 RVSEFALDWSVNNTSVSPDGKLLAVVGDSTECLISDSHSGKVISSLRGHKDYSFASAWHPNGLILATGNQDTACRLWDIR 320 
WD40-rpts      ______________WD 5_________________)   (_________________WD 6________________)  

Query      321 NPSESFAVLKGNMGAIRGLKFTPEGRFLAMAEPADFVHIFDTQSGFLQSQEIDLFGEIAGISFSPDTEALYVGVADRTYG 400 
WD40-rpts        (_________________WD 7________________)   (_________________WD 8______________

Query      401 SLLEYKRRKDNHYMDSFY 418 
WD40-rpts      ___)              

8 WD40-repeats found in QUERY=AT1G36070.1 (Len=418):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    83-121      7.01  404.37  0.00022       17.5%     51.22
  WD 2:  Seg  5   125-163      6.84  397.02  0.00028       12.5%     35.79
  WD 3:  Seg  8   162-189      3.67  266.14  0.01602       10.0%     25.60
  WD 4:  Seg 11   193-235      6.36  377.53  0.00051       27.5%     54.46
  WD 5:  Seg 15   236-276      7.55  426.59  0.00011       25.0%     53.98
  WD 6:  Seg 19   280-318      9.81  519.95  6.1e-06       27.5%     51.11
  WD 7:  Seg 23   323-361      8.74  475.64  2.4e-05       20.0%     54.61
  WD 8:  Seg 27   365-404      7.44  421.83  0.00013       25.0%     53.50

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   83-121    -GKNFYDFQ-FNTRLVTS---TIVHFQLR-NLVWATSKHDV-YLMQ
   WD 2  125-163    -LMHWSSLL-QRGKEVLN---VARSVTPT-QKLPGLFSEPL-SRVQ
   WD 3  162-189    -------------VQVSS---MAVKENLI-LLGGFDGELLC-KCVN
   WD 4  193-235    -VAFCTRLS-TEDNAITNTVDIYRDPSGSLRLITANNDCKI-RVFD
   WD 5  236-276    AQSFTRVSEFALDWSVNN---TSVSPDGK-LLAVVGDSTEC-LISD
   WD 6  280-318    -GKVISSLR-GHKDYSFA---SAWHPNGL-ILATGNQDTAC-RLWD
   WD 7  323-361    -SESFAVLK-GNMGAIRG---LKFTPEGR-FLAMAEPADFV-HIFD
   WD 8  365-404    -GFLQSQEI-DLFGEIAG---ISFSPDTE-ALYVGVADRTYGSLLE

   WD40 Template    TGECLRTLS-GHTSGVTS---VSFSPDGK-RLVSGSEDGTI-KVWD