Input parameters:

  Query = AT1G36070.2 (Len=417)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G36070.2, Len=417):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEQTKDDSDFEDDCETKMETDTSAQEARNGKDIQGIQWEGFKYNRDEFRETRLKQYDNFVNILRPSSREKLDKEHGQVVE 80  
WD40-rpts                                                                                      

Query       81 KGKNFYDFQFNTRLVTSTIVHFQLRNLVWATSKHDVYLMQNYSLMHWSSLLQRGKEVLNVARSVTPTQKLPGLFSEPLSR 160 
WD40-rpts       (_________________WD 1________________)   (_________________WD 2_______________

Query      161 VQVSSMAVKENLILLGGFDGELLCKCVNQPGVAFCTRLSTEDNAITNTVDIYRDPSGSLRLITANNDCKIRVFDAQSFTR 240 
WD40-rpts      _)                             (___________________WD 3__________________)(_____

Query      241 VSEFALDWSVNNTSVSPDGKLLAVVGDSTECLISDSHSGKVISSLRGHKDYSFASAWHPNGLILATGNQDTACRLWDIRN 320 
WD40-rpts      _____________WD 4_________________)   (_________________WD 5________________)   

Query      321 PSESFAVLKGNMGAIRGLKFTPEGRFLAMAEPADFVHIFDTQSGFLQSQEIDLFGEIAGISFSPDTEALYVGVADRTYGS 400 
WD40-rpts       (_________________WD 6________________)   (_________________WD 7_______________

Query      401 LLEYKRRKDNHYMDSFY 417 
WD40-rpts      __)              

7 WD40-repeats found in QUERY=AT1G36070.2 (Len=417):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    82-120      7.41  420.90  0.00013       17.5%     53.89
  WD 2:  Seg  6   124-162      5.70  349.99  0.00119       12.5%     27.74
  WD 3:  Seg 12   192-234      6.20  370.71  0.00063       27.5%     56.25
  WD 4:  Seg 16   235-275      7.61  429.05  0.00010       25.0%     53.24
  WD 5:  Seg 20   279-317      9.85  521.35  5.8e-06       27.5%     52.66
  WD 6:  Seg 24   322-360      8.87  481.14  2.0e-05       20.0%     56.96
  WD 7:  Seg 28   364-403      7.59  428.33  0.00010       25.0%     56.53

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   82-120    -GKNFYDFQ-FNTRLVTS---TIVHFQLR-NLVWATSKHDV-YLMQ
   WD 2  124-162    -LMHWSSLL-QRGKEVLN---VARSVTPT-QKLPGLFSEPL-SRVQ
   WD 3  192-234    -VAFCTRLS-TEDNAITNTVDIYRDPSGSLRLITANNDCKI-RVFD
   WD 4  235-275    AQSFTRVSEFALDWSVNN---TSVSPDGK-LLAVVGDSTEC-LISD
   WD 5  279-317    -GKVISSLR-GHKDYSFA---SAWHPNGL-ILATGNQDTAC-RLWD
   WD 6  322-360    -SESFAVLK-GNMGAIRG---LKFTPEGR-FLAMAEPADFV-HIFD
   WD 7  364-403    -GFLQSQEI-DLFGEIAG---ISFSPDTE-ALYVGVADRTYGSLLE

   WD40 Template    TGECLRTLS-GHTSGVTS---VSFSPDGK-RLVSGSEDGTI-KVWD