Input parameters:

  Query = AT1G47610.1 (Len=351)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G47610.1, Len=351):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPRSDLTRGYSDGDSLVGEIVREEGHIYSLAATNDLLYTGSDNNYIRVWKNLNEFSGFKSNSGLVKAIVISREAKVFTGH 80  
WD40-rpts                   (________________WD 1_______________)(_________________WD 2________

Query       81 QDGKIRVWKTSSKNPRVYTRAGSLPALKDVLKSSVKPSNYVEVRRCRTALWIKHSDAVSCLSLAEDQGLLYSASWDRTVK 160 
WD40-rpts      ________)(_______________WD 3_______________)(________________WD 4______________

Query      161 VWRIHDLKCIESIKAHDDAVNSVTTAESLVFTGSADGTVKVWKREIRGKRTAHSLFQTLLKQESAVTALVTSHMAVYSGS 240 
WD40-rpts      __)   (________________WD 5_______________)         (________________WD 6_______

Query      241 SDGAVNFWEMGDKKLLKHCEVFKKHRLAVLCIAAAGKLLFSGAADKKICVWRREGKVHTCVSVLTGHTGPVKCLAVVEPS 320 
WD40-rpts      ________)(___________________WD 7__________________)     (______________________

Query      321 GGEEEDGGDGRLVLYSGSLDKSVKVWRVPRH 351 
WD40-rpts      WD 8______________________)    

8 WD40-repeats found in QUERY=AT1G47610.1 (Len=351):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    14-50       6.97  402.45  0.00023       20.0%     50.80
  WD 2:  Seg  6    51-89       9.17  493.53  1.4e-05       22.5%     49.06
  WD 3:  Seg 10    90-125      3.59  262.96  0.01766       17.5%     32.84
  WD 4:  Seg 13   126-163      8.69  473.76  2.6e-05       30.0%     54.95
  WD 5:  Seg 17   167-203      8.13  450.57  5.3e-05       32.5%     50.50
  WD 6:  Seg 21   213-249      6.77  394.44  0.00030       30.0%     50.67
  WD 7:  Seg 25   250-292      6.36  377.38  0.00051       25.0%     47.59
  WD 8:  Seg 29   298-347      7.56  426.81  0.00011       35.0%     46.79

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   14-50     -DS---LVGEIVREEGHIYSLAATND--L-----------LYTGSDNNYIRVWK
   WD 2   51-89     NLN---EFSGFKSNSGLVKAIVISREAK------------VFTGHQDGKIRVWK
   WD 3   90-125    TSSKNPRVYTRAGSLPALKDVLKS------------------SVKPSNYVEVRR
   WD 4  126-163    C-----RTALWIKHSDAVSCLSLAEDQGL-----------LYSASWDRTVKVWR
   WD 5  167-203    -LK---CIESIKAHDDAVNSVTTAES--L-----------VFTGSADGTVKVWK
   WD 6  213-249    -HS---LFQTLLKQESAVTALVTS--HMA-----------VYSGSSDGAVNFWE
   WD 7  250-292    MGDKKLLKHCEVFKKHRLAVLCIAAAGKL-----------LFSGAADKKICVWR
   WD 8  298-347    -HT---CVSVLTGHTGPVKCLAVVEPSGGEEEDGGDGRLVLYSGSLDKSVKVWR

   WD40 Template    TGE---CLRTLSGHTSGVTSVSFSPDGKR-----------LVSGSEDGTIKVWD