Input parameters:

  Query = AT1G48630.1 (Len=326)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G48630.1, Len=326):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAEGLVLKGTMCAHTDMVTAIATPVDNSDVIVTSSRDKSIILWKLTKEDKSYGVAQRRMTGHSHFVQDVVLSSDGQFALS 80  
WD40-rpts         (__________________WD 1_________________)        (_________________WD 2______

Query       81 GSWDGELRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSASRDRTIKLWNTLGECKYTISEADGHKEWVSCVRFSPN 160 
WD40-rpts      __________)   (_________________WD 3________________)     (__________________WD 

Query      161 TLVPTIVSASWDKTVKVWNLQNCKLRNTLAGHSGYLNTVAVSPDGSLCASGGKDGVILLWDLAEGKKLYSLEAGSIIHSL 240 
WD40-rpts      4_________________)   (_________________WD 5________________)   (_______________

Query      241 CFSPNRYWLCAATENSIRIWDLESKSVVEDLKVDLKAEAEKTDGSTGIGNKTKVIYCTSLNWSADGNTLFSGYTDGVIRV 320 
WD40-rpts      _WD 6_______________)                      (_________________WD 7_______________

Query      321 WGIGRY 326 
WD40-rpts      _)    

7 WD40-repeats found in QUERY=AT1G48630.1 (Len=326):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-44       7.83  438.20  7.7e-05       27.5%     52.14
  WD 2:  Seg  5    53-91       9.99  527.37  4.8e-06       40.0%     53.56
  WD 3:  Seg  9    95-133     10.87  563.75  1.6e-06       50.0%     56.66
  WD 4:  Seg 13   139-179      8.58  468.88  3.0e-05       37.5%     51.04
  WD 5:  Seg 17   183-221     10.37  543.21  3.0e-06       40.0%     53.69
  WD 6:  Seg 21   225-261      6.63  388.70  0.00036       30.0%     53.29
  WD 7:  Seg 25   284-322      7.51  424.81  0.00012       35.0%     43.28

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    4-44     GLVLKGTMCAHTDMVTAIATPVDN-SDVIVTSSRDKSIILWK
   WD 2   53-91     -GVAQRRMTGHSHFVQDVVLSSDG--QFALSGSWDGELRLWD
   WD 3   95-133    -GESTRRFVGHTKDVLSVAFSTDN--RQIVSASRDRTIKLWN
   WD 4  139-179    -KYTISEADGHKEWVSCVRFSPNTLVPTIVSASWDKTVKVWN
   WD 5  183-221    -CKLRNTLAGHSGYLNTVAVSPDG--SLCASGGKDGVILLWD
   WD 6  225-261    -GKKLYSLEAG-SIIHSLCFSPNR--YWLCAAT-ENSIRIWD
   WD 7  284-322    -GSTGIGNKTKVIYCTSLNWSADG--NTLFSGYTDGVIRVWG

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDG--KRLVSGSEDGTIKVWD