Input parameters:

  Query = AT1G48870.1 (Len=593)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G48870.1, Len=593):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MMSVGRSEVVVDDLFFDSSDVLSIGEQVVVEEEEVEEAEFQVWSGEPISVEERRVRFLKKMGLLEERCLERMVSDYSDEV 80  
WD40-rpts                                                                                      

Query       81 TSSSSDSSLCDSGLQCCVREENYGSTTSISDEELEGVDDDDDDSEEISSNASTSPSRSSSKKSAKKWLFNCFSAGVKDKD 160 
WD40-rpts                                (__________________WD 1__________________)      (_____

Query      161 FKYKSSEETMSKVKVKTNKKSHVELSAAYMVQKINGHKGKIWTLKFSPDGKYLATGGEDGVVKIWRITLSDSLLASFLRQ 240 
WD40-rpts      ________WD 2____________)  (_________________WD 3________________)              

Query      241 QEPINQQAALVLFPQKAFHIEETPFQELYGHTGDVLDLAWSDSNLLLSASKDKTVRLWRTGCDQCLHVFHHNNYVTCVEF 320 
WD40-rpts                           (________________WD 4________________)(__________________WD

Query      321 NPVNKNNFASGSIDGKARIWGLSEERVVAWTDVRDSISAISYQPNGNGFVVGCITGNCRFYQILDNDVIMDEQILIRGRN 400 
WD40-rpts       5__________________)  (_________________WD 6________________)(_________________

Query      401 RITAVEFCPGSSEKILVSSEDSKVRIFDKTQMIHKFKAPSNFGRQSSASFVSSTGKHILSVRRGVGVYLWNNDAFPSRKG 480 
WD40-rpts      ___WD 7____________________)(___________________WD 8__________________)(________

Query      481 AKSSRSFEYFHSPGVSAVAAWTQPETKVSKVAGDDEESRRVMRKIQSSGRLSRSCRVTATWPEEKLLMNVGSYDSNLPVG 560 
WD40-rpts      _______________WD 9______________________) (________________WD10________________

Query      561 EFDLAEAWRLVIVTVSLDGMIRTFHNYGLPRTF 593 
WD40-rpts      )                                

10 WD40-repeats found in QUERY=AT1G48870.1 (Len=593):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   107-148      3.71  268.11  0.01507       17.5%      1.10
  WD 2:  Seg  5   155-185      3.45  256.99  0.02122       10.0%     38.79
  WD 3:  Seg  8   188-226     10.43  545.30  2.8e-06       37.5%     53.79
  WD 4:  Seg 14   262-299      7.46  422.90  0.00012       32.5%     51.51
  WD 5:  Seg 18   300-341      7.61  428.81  0.00010       35.0%     53.77
  WD 6:  Seg 22   344-382      8.14  451.11  5.2e-05       17.5%     55.83
  WD 7:  Seg 26   383-428      7.00  403.75  0.00023       22.5%     56.84
  WD 8:  Seg 30   429-471      6.76  394.00  0.00030       12.5%     53.82
  WD 9:  Seg 34   472-522      4.96  319.47  0.00308       17.5%     43.39
  WD10:  Seg 37   524-561      5.42  338.53  0.00170       17.5%     30.33

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  107-148    TS---------I-----SDEELEGVDDDD---DDSEEIS--SN-ASTSPSR-SSSKKSAKKWL
   WD 2  155-185    -----------------------G--VKD---KDFKYKS--SE-ETMSKVK-VKTNKKSHVEL
   WD 3  188-226    -A---------Y-----MVQKING--HKG---KIWTLKF--SP-DGKYLAT-GGEDGVVKIWR
   WD 4  262-299    -E---------T-----PFQELYG--HTG---DVLDLAW--S--DSNLLLS-ASKDKTVRLWR
   WD 5  300-341    TG--------CD-----QCLHVFH--HNN---YVTCVEF--NPVNKNNFAS-GSIDGKARIWG
   WD 6  344-382    -E---------E-----RVVAWTD--VRD---SISAISY--QP-NGNGFVV-GCITGNCRFYQ
   WD 7  383-428    IL---------DNDVIMDEQILIR--GRN---RITAVEF--CPGSSEKILV-SSEDSKVRIFD
   WD 8  429-471    KT---------Q-----MIHKFKA--PSNFGRQSSASFV--SS-TGKHILS-VRRGVGVYLWN
   WD 9  472-522    NDAFPSRKGAKS-----SRSFEYF--HSP---GVSAVAAWTQP-ETKVSKV-AGDDEESRRVM
   WD10  524-561    -----------------KIQSSGR--LSR---SCRVTAT--WP-EEKLLMNVGSYDSNLPVGE

   WD40 Template    TG---------E-----CLRTLSG--HTS---GVTSVSF--SP-DGKRLVS-GSEDGTIKVWD