Accession: AT1G49040.3 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = AT1G49040.3 (Len=1040)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G49040.3, Len=1040):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGRIFEYFVVCGLGPEMRTVDGDLGFHGMQTFYLPALLDQFPPTDQSPYPAPPPQLPTCVLPAGVEFHSSGFVSSDPASF 80  
WD40-rpts                                                                                      

Query       81 PRSYPIVLTEGDGSKIFVSCIAFRDRVCEDIIEAYRLPPNTYADKCICLVSHAPNFRVLRNSLEEIFVLCFSSEGSCKPL 160 
WD40-rpts                                                                                      

Query      161 WDIIAYMVSNVPLPTPGKDRVLFAVENCLLSVEAPPEDSLPQADISLQPLVQCLDVDNLIKLFTSVLVERRILIRSNKYS 240 
WD40-rpts                                                                                      

Query      241 LLTLVSESICHLIYPFRWLQVYIPLLFFSGVDYIDAPTPYMMGLHSDVDTSNLAMDGVVVVDLDINQITTSEEIPQIPEP 320 
WD40-rpts                                                                                      

Query      321 EFSTLRNDILKLLHPNVVAIDQLKGFGNSVEQCPKSLSKPWGEDHDLQLRVIFLKCFASILGGYRNFIENKVFSTDAFLK 400 
WD40-rpts                                                                                      

Query      401 RRSRSTNQPPEPMLVQFLGSFAFLDYLERRLSSDEKSTNLLEKLQDAVGRGQDAMSILPKSSMEPEIITIAEPEVEESAT 480 
WD40-rpts                                                                                      

Query      481 RYTYDRFPASVRSEEQEEKRKQILAAASGALESNGRHPPSSPPGKNTKEDNFSSMERAAERERMVLDIQVKLQGLWLRLL 560 
WD40-rpts                                                                                      

Query      561 KLGSDEDPLSSFEYGTILALIESDAEGIGGSGFIECIREHLYSGWHGQLSEEQFIAVKELLKMAVGRAASRSDLSTVRDA 640 
WD40-rpts                                                                                      

Query      641 LEVSAEMFKKDANNVSDYVQRHLISIPIWEELRFWEGYFEYLMEQPANESVNYATLVTARLIIVASHMAGLGLPDTEAWN 720 
WD40-rpts                                                              (_______________________

Query      721 MIETIAEKQKLGYKLLIKLRGFLSHVQQLRVGYWGASSFKQQAISAGLPSPRPKDVSVSDETQQPSEASGRSWVQSMFSR 800 
WD40-rpts      ____WD 1__________________________)          (_____________________________WD 2_

Query      801 DTASRANSFSRVRKWVSDNASSDITAAAQKKIQTNVRVLKGHGGAVTALHSVTRREVCDLVGDREDAGFFISGSTDCLVK 880 
WD40-rpts      ____________________________)           (___________________WD 3________________

Query      881 IWDPSLRGSELRATLKGHTGTVRAISSDRGKIVSGSDDLSVIVWDKQTTQLLEELKGHDSQVSCVKMLSGERVLTAAHDG 960 
WD40-rpts      __)     (________________WD 4_______________)   (________________WD 5___________

Query      961 TVKMWDVRTDMCVATVGRCSSAILSLEYDDSTGILAAAGRDTVANIWDIRSGKQMHKLKGHTKWIRQYTYGFFFRYKFIL 1040
WD40-rpts      _____)   (_________________WD 6________________)

6 WD40-repeats found in QUERY=AT1G49040.3 (Len=1040):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 14   697-755      3.40  255.29  0.02236       15.0%      7.58
  WD 2:  Seg 17   766-829      6.37  377.91  0.00050       12.5%     53.88
  WD 3:  Seg 22   841-883      6.74  393.27  0.00031       25.0%     45.05
  WD 4:  Seg 26   889-925      8.33  458.93  4.1e-05       42.5%     49.16
  WD 5:  Seg 30   929-966      8.85  480.27  2.1e-05       37.5%     49.23
  WD 6:  Seg 34   970-1008     9.34  500.66  1.1e-05       20.0%     56.27

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  697-755    VT------------------------ARLII---VASHMAGL-GLPDTEAWNMIETIAEKQKLGYKLLIKLRGFLSHVQQLRVGYWG
   WD 2  766-829    AGLPSPRPKDVSVSDETQQPSEASGRSWVQS---MFSRDTASRANSFS-------------RVR-------KWVSDNASSDITAAAQ
   WD 3  841-883    GH------------------------GGAVTALHSVTRREVCDLVGDR-------------EDA-------GFFISGSTDCLVKIWD
   WD 4  889-925    -S------------------------ELRAT---LKGHTGTVRAI--S-------------SDR-------GKIVSGSDDLSVIVWD
   WD 5  929-966    -T------------------------QLLEE---LKGHDSQVSCVKML--------------SG-------ERVLTAAHDGTVKMWD
   WD 6  970-1008   -D------------------------MCVAT---VGRCSSAILSLEYD-------------DST-------GILAAAGRDTVANIWD

   WD40 Template    TG------------------------ECLRT---LSGHTSGVTSVSFS-------------PDG-------KRLVSGSEDGTIKVWD