Input parameters:

  Query = AT1G49450.1 (Len=471)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G49450.1, Len=471):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAIEENRSHNDYLRRMTFAAFLKSGSLAAEEETYHSDGDHHNQSTFSSNSDSQRPSNASSASSDSSSPIYPLSPWNQTYY 80  
WD40-rpts                                   (__________________WD 1__________________)    (____

Query       81 PSNDNTTSFSSVTQSPWNQTYSPYHKSPWIYQTRNSDFEDDPDNGLIGTVVRQEGHVYSLAASGDLLFTGSDSKNIRVWK 160 
WD40-rpts      _____________WD 2________________)         (________________WD 3_______________)

Query      161 DLKDFSGFKSTSGFVKAIVVTRDNRVFTGHQDGKIRVWRGSKKNPEKYSRVGSLPTLKEFLTKSVNPRNYVEVRRRKNVL 240 
WD40-rpts      (_________________WD 4________________)(______________WD 5______________)(______

Query      241 KIRHFDAVSCLSLNEDLGLLYSGSWDKTLKVWRLSDSKCLESIEAHDDAVNTVVSGFDDLVFTGSADGTLKVWKREVQGK 320 
WD40-rpts      ___________WD 6_________________)   (________________WD 7________________)      

Query      321 EMKHVLVQVLMKQENAVTALAVNLTDAVVYCGSSDGTVNFWERQKYLTHKGTIHGHRMAVLCLATAGSLLLSGGADKNIC 400 
WD40-rpts         (_________________WD 8________________)(__________________WD 9_______________

Query      401 VWKRNGDGSHTCLSVLMDHEGPVKCLAAVEEAEEDHNDGDDGGEKGDQRWIVYSGSLDNSVKVWRVTDYAS 471 
WD40-rpts      __)      (_________________________WD10_________________________)      

10 WD40-repeats found in QUERY=AT1G49450.1 (Len=471):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    30-71       7.04  405.62  0.00021       20.0%     44.74
  WD 2:  Seg  7    76-114      5.84  355.91  0.00099       15.0%     32.31
  WD 3:  Seg 11   124-160      6.76  393.99  0.00030       27.5%     53.20
  WD 4:  Seg 15   161-199      8.85  480.12  2.1e-05       22.5%     52.13
  WD 5:  Seg 19   200-233      5.64  347.66  0.00128       12.5%     39.33
  WD 6:  Seg 22   234-273      9.60  511.08  8.0e-06       32.5%     53.95
  WD 7:  Seg 26   277-314      8.41  461.92  3.7e-05       35.0%     54.53
  WD 8:  Seg 30   324-362      8.42  462.40  3.6e-05       22.5%     50.01
  WD 9:  Seg 34   363-403      6.54  384.98  0.00040       25.0%     47.62
  WD10:  Seg 38   410-465      6.73  392.72  0.00032       30.0%     51.01

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   30-71     -EEET-YHSDGDHHNQSTFSSNSDSQR--------------PSNASSASSDSSSPIYP
   WD 2   76-114    -NQTY-YPSNDNTTSFSSVTQSPWNQT-----------------YSPYHKSPWIYQTR
   WD 3  124-160    -NGLI-GTVVRQEGHVYSLAAS--GDL-----------------LFTGSDSKNIRVWK
   WD 4  161-199    DLKDF-SGFKSTSGFVKAIVVTRDN-R-----------------VFTGHQDGKIRVWR
   WD 5  200-233    -------GSKKNPEKYSRVGSLPTLKE-----------------FLTKSVNPRNYVEV
   WD 6  234-273    RRRKN-VLKIRHFDAVSCLSLNEDLGL-----------------LYSGSWDKTLKVWR
   WD 7  277-314    -SKCL-ESIEAHDDAVNTVVSGFDD-L-----------------VFTGSADGTLKVWK
   WD 8  324-362    -HVLV-QVLMKQENAVTALAVNLTDAV-----------------VYCGSSDGTVNFWE
   WD 9  363-403    RQKYLTHKGTIHGHRMAVLCLATAGSL-----------------LLSGGADKNICVWK
   WD10  410-465    -HTCL-SVLMDHEGPVKCLAAVEEAEEDHNDGDDGGEKGDQRWIVYSGSLDNSVKVWR

   WD40 Template    TGECL-RTLSGHTSGVTSVSFSPDGKR-----------------LVSGSEDGTIKVWD