WDRR: WD40 Repeat Recognition
| [HOME] [JOB LIST] [PRE-CALCULATED RESULTS] [VISITORS] [ABOUT] |
| Pre-calculated Results - Accession: AT1G49540.1 [Arabidopsis thaliana] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = AT1G49540.1 (Len=838) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (AT1G49540.1, Len=838): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSENTKVEAKRVFIGAGCNRVVNNVSWGASGLVSFGAQNAVAVFCPKTAQILTTLPGHKASVNCTHWLPTSKFAFKAKKL 80
WD40-rpts (________________WD 1________________) (______________________WD 2_____
Query 81 DRQYLLSGDSDGIIILWELSTLNNDWRHVLQLPLSHKKGVTCITAYMVSETDAMFASASSDGVVNVWDVSFPSQPSEECK 160
WD40-rpts _________________) (__________________WD 3__________________)(___________
Query 161 VVCLDSICVDTKAIVTLSLAELPQNPGRFALALGGLDNKIKLYSGERTGKFTSVCELKGHTDWIRSLDFSLPLHTTEEIP 240
WD40-rpts ______________WD 4_________________________) (_____________________WD 5____
Query 241 NSIMLVSSSQDKVIRIWKLVLVGDVGSWRREITLASYIEGPVFVSGTFTYQISVESVLIGHEDWVYSVEWQPPVIDFIDG 320
WD40-rpts _________________) (__________________________WD 6___
Query 321 RLVNHQPLSILSASMDKTMMIWRPEKKTGVWVNVVCVGELSHCALGFYGGHWSPNSLSILAHGYGGAFHLWRNVSSSKES 400
WD40-rpts ______________________)(______________________WD 7_____________________)
Query 401 ENWQMQKVPSGHFAAVTDVTWARTGEYLLSVSQDQTTRVFSAWKNDEGNEAEDEHWHELARPQVHGHDINCVAMVQGKGN 480
WD40-rpts (_________________WD 8________________) (________________________WD 9_________
Query 481 HRFVSGAEEKVVRVFEAPLSFLKTLNHTCAGGEGSFPEDLQADVQVLGANMSALGLSQKPIYLHSSSEPLERNGGGEGLD 560
WD40-rpts _______________)(______________________WD10_____________________) (_________
Query 561 TFETVPEAAPAELKEPPIEDQLAFHTLWPESHKLYGHGNELFSLCSDHKGNLVASSCKAQSASMAEIWLWEVGTWKAVGR 640
WD40-rpts _______WD11_______________)(___________________WD12___________________) (_____
Query 641 LQSHSLTVTHLEFSYDDTLLLSVSRDRHFSVFSIQRTDNGEVSHKLMAKVEAHKRIIWACSWNPFGHQFATSSRDKTVKI 720
WD40-rpts ____________WD13________________) (_________________WD14_______________
Query 721 WSVENDARIKQILVLPPFGSSVTAVAWTGLDRNEKSGCVAVGMESGLIELSNVKIIETEEGTTATAALALRLEPFMCHVS 800
WD40-rpts _)(______________________WD15______________________) (___________________
Query 801 AVNRLAWRPTEKCESNQSLRWLTSCGDDNCVRVFNFKF 838
WD40-rpts ______WD16________________________)
 16 WD40-repeats found in QUERY=AT1G49540.1 (Len=838): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 8-45 4.99 320.64 0.00297 22.5% 50.37 WD 2: Seg 5 49-98 7.24 413.59 0.00017 37.5% 53.11 WD 3: Seg 9 107-148 6.69 391.01 0.00033 32.5% 47.60 WD 4: Seg 12 149-204 5.40 337.91 0.00174 25.0% 57.78 WD 5: Seg 16 211-258 7.13 409.05 0.00019 37.5% 52.72 WD 6: Seg 22 287-343 5.77 353.15 0.00108 32.5% 54.97 WD 7: Seg 26 344-392 6.82 396.55 0.00028 20.0% 56.21 WD 8: Seg 30 403-441 8.16 451.63 5.1e-05 32.5% 55.19 WD 9: Seg 34 443-496 6.47 382.12 0.00044 20.0% 51.42 WD10: Seg 38 497-545 5.38 337.08 0.00178 17.5% 37.83 WD11: Seg 42 551-587 2.94 236.27 0.04000 7.5% 14.29 WD12: Seg 45 588-631 6.35 377.10 0.00051 20.0% 54.56 WD13: Seg 49 635-673 8.49 465.28 3.3e-05 30.0% 57.84 WD14: Seg 53 684-722 8.04 446.58 6.0e-05 22.5% 54.24 WD15: Seg 57 723-772 5.19 329.07 0.00229 22.5% 53.61 WD16: Seg 60 781-835 5.21 329.78 0.00224 27.5% 45.76Multiple sequence alignment of 16 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 8-45 EA-----------K--------------R--------VFIGAGCNRVVNNVS---WG---------A-------------SG----------------LVSFGAQNA-----VAVFC WD 2 49-98 -A-----------Q--------------I--------LTTLPGHKASVNCTH---WL---------P--TSKFAFKAKKLDRQ---------Y-----LLSGDSDGI-----IILWE WD 3 107-148 -R-----------H--------------V--------LQLPLSHKKGVTCITAYMVS---------E-------------TDA---------M-----FASASSDGV-----VNVWD WD 4 149-204 VSFPSQPSEECKVV--------------C--------LDSICVDTKAIVTLS---LA----ELPQNP-------------GRF---------A-----LALGGLDNK-----IKLYS WD 5 211-258 -F-----------T--------------S--------VCELKGHTDWIRSLD---FSLPLHTTEEIP-------------NSI---------M-----LVSSSQDKV-----IRIWK WD 6 287-343 TF-------TYQIS--------------V--------ESVLIGHEDWVYSVE---WQ---------PPVIDFIDGRLVNHQPL---------S-----ILSASMDKT-----MMIWR WD 7 344-392 PE-----------K-----KTGVWVNVVC--------VGELSHCALGFYGGH---WS---------P-------------NSL---------S-----ILAHGYGGA-----FHLWR WD 8 403-441 -W-----------Q--------------M--------QKVPSGHFAAVTDVT---WA---------R-------------TGE---------Y-----LLSVSQDQT-----TRVFS WD 9 443-496 WK-----------NDEGNEAEDEHWHELA--------RPQVHGHDINCVAMV---QG---------K-------------GNH---------R-----FVSGAEEKV-----VRVFE WD10 497-545 AP-----------L--------------S--------FLKTLNHTCAGGEGS---FP---------E-------------DLQADVQVLGANM-----SALGLSQKP-----IYLHS WD11 551-587 ----------------------------E--------RNGGGEGLDTFETVP---EA---------A-------------PAE---------L-----KEPPIEDQL-----AFHTL WD12 588-631 -W-----------P--------------E--------SHKLYGHGNELFSLC---SD---------H-------------KGN---------L-----VASSCKAQSASMAEIWLWE WD13 635-673 -W-----------K--------------A--------VGRLQSHSLTVTHLE---FS---------Y-------------DDT---------L-----LLSVSRDRH-----FSVFS WD14 684-722 -H-----------K--------------L--------MAKVEAHKRIIWACS---WN---------P-------------FGH---------Q-----FATSSRDKT-----VKIWS WD15 723-772 VE------NDARIK--------------Q--------ILVLPPFGSSVTAVA---WT---------G-------------LDR---------NEKSGCVAVGMESGL-----IELSN WD16 781-835 -G-----------T--------------TATAALALRLEPFMCHVSAVNRLA---WR---------P-------------TEK-CESNQSLRW-----LTSCGDDNC-----VRVFN WD40 Template TG-----------E--------------C--------LRTLSGHTSGVTSVS---FS---------P-------------DGK---------R-----LVSGSEDGT-----IKVWD |
|
Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |