WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: AT1G49540.2 [Arabidopsis thaliana] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = AT1G49540.2 (Len=840) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (AT1G49540.2, Len=840): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
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Query 1 MSENTKVEAKRVFIGAGCNRVVNNVSWGASGLVSFGAQNAVAVFCPKTAQILTTLPGHKASVNCTHWLPTSKFAFKAKKL 80
WD40-rpts (________________WD 1________________) (______________________WD 2_____
Query 81 DRQYLLSGDSDGIIILWELSTLNNDQQWRHVLQLPLSHKKGVTCITAYMVSETDAMFASASSDGVVNVWDVSFPSQPSEE 160
WD40-rpts _________________) (__________________WD 3__________________)
Query 161 CKVVCLDSICVDTKAIVTLSLAELPQNPGRFALALGGLDNKIKLYSGERTGKFTSVCELKGHTDWIRSLDFSLPLHTTEE 240
WD40-rpts (___________________WD 4___________________) (_____________________WD 5__
Query 241 IPNSIMLVSSSQDKVIRIWKLVLVGDVGSWRREITLASYIEGPVFVSGTFTYQISVESVLIGHEDWVYSVEWQPPVIDFI 320
WD40-rpts ___________________) (__________________________WD 6_
Query 321 DGRLVNHQPLSILSASMDKTMMIWRPEKKTGVWVNVVCVGELSHCALGFYGGHWSPNSLSILAHGYGGAFHLWRNVSSSK 400
WD40-rpts ________________________)(______________________WD 7_____________________)
Query 401 ESENWQMQKVPSGHFAAVTDVTWARTGEYLLSVSQDQTTRVFSAWKNDEGNEAEDEHWHELARPQVHGHDINCVAMVQGK 480
WD40-rpts (_________________WD 8________________) (________________________WD 9_______
Query 481 GNHRFVSGAEEKVVRVFEAPLSFLKTLNHTCAGGEGSFPEDLQADVQVLGANMSALGLSQKPIYLHSSSEPLERNGGGEG 560
WD40-rpts _________________)(______________________WD10_____________________) (_______
Query 561 LDTFETVPEAAPAELKEPPIEDQLAFHTLWPESHKLYGHGNELFSLCSDHKGNLVASSCKAQSASMAEIWLWEVGTWKAV 640
WD40-rpts _________WD11_______________)(___________________WD12___________________) (___
Query 641 GRLQSHSLTVTHLEFSYDDTLLLSVSRDRHFSVFSIQRTDNGEVSHKLMAKVEAHKRIIWACSWNPFGHQFATSSRDKTV 720
WD40-rpts ______________WD13________________) (_________________WD14_____________
Query 721 KIWSVENDARIKQILVLPPFGSSVTAVAWTGLDRNEKSGCVAVGMESGLIELSNVKIIETEEGTTATAALALRLEPFMCH 800
WD40-rpts ___)(______________________WD15______________________) (_________________
Query 801 VSAVNRLAWRPTEKCESNQSLRWLTSCGDDNCVRVFNFKF 840
WD40-rpts ________WD16________________________)
 16 WD40-repeats found in QUERY=AT1G49540.2 (Len=840): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 8-45 4.99 320.71 0.00296 22.5% 48.87 WD 2: Seg 5 49-98 7.22 413.02 0.00017 37.5% 55.44 WD 3: Seg 9 109-150 6.56 385.69 0.00039 32.5% 46.85 WD 4: Seg 12 163-206 5.42 338.70 0.00170 25.0% 55.81 WD 5: Seg 16 213-260 7.09 407.74 0.00020 37.5% 53.12 WD 6: Seg 22 289-345 5.78 353.35 0.00108 32.5% 54.32 WD 7: Seg 26 346-394 6.84 397.06 0.00028 20.0% 56.77 WD 8: Seg 30 405-443 8.13 450.59 5.3e-05 32.5% 54.45 WD 9: Seg 34 445-498 6.51 383.77 0.00042 20.0% 49.62 WD10: Seg 38 499-547 5.44 339.57 0.00165 17.5% 35.45 WD11: Seg 42 553-589 3.37 254.05 0.02323 7.5% 15.59 WD12: Seg 44 590-633 6.37 377.60 0.00051 20.0% 53.87 WD13: Seg 48 637-675 8.53 466.86 3.2e-05 30.0% 58.25 WD14: Seg 52 686-724 8.01 445.73 6.1e-05 22.5% 53.60 WD15: Seg 56 725-774 5.20 329.45 0.00226 22.5% 53.40 WD16: Seg 59 783-837 5.21 330.04 0.00222 27.5% 45.76Multiple sequence alignment of 16 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 8-45 EA-----K--------------R--------VFIGAGCNRVVNNVS---WG---------A-------------S---------G---------------LVSFGAQNA-----VAVFC WD 2 49-98 -A-----Q--------------I--------LTTLPGHKASVNCTH---WL---------P--TSKFAFKAKKLD---------RQ--------Y-----LLSGDSDGI-----IILWE WD 3 109-150 -R-----H--------------V--------LQLPLSHKKGVTCITAYMVS---------E-------------T---------DA--------M-----FASASSDGV-----VNVWD WD 4 163-206 -V-----V--------------C--------LDSICVDTKAIVTLS---LA----ELPQNP-------------G---------RF--------A-----LALGGLDNK-----IKLYS WD 5 213-260 -F-----T--------------S--------VCELKGHTDWIRSLD---FSLPLHTTEEIP-------------N---------SI--------M-----LVSSSQDKV-----IRIWK WD 6 289-345 TF-TYQIS--------------V--------ESVLIGHEDWVYSVE---WQ---------PPVIDFIDGRLVNHQ---------PL--------S-----ILSASMDKT-----MMIWR WD 7 346-394 PE-----K-----KTGVWVNVVC--------VGELSHCALGFYGGH---WS---------P-------------N---------SL--------S-----ILAHGYGGA-----FHLWR WD 8 405-443 -W-----Q--------------M--------QKVPSGHFAAVTDVT---WA---------R-------------T---------GE--------Y-----LLSVSQDQT-----TRVFS WD 9 445-498 WK-----NDEGNEAEDEHWHELA--------RPQVHGHDINCVAMV---QG---------K-------------G---------NH--------R-----FVSGAEEKV-----VRVFE WD10 499-547 AP-----L--------------S--------FLKTLNHTCAGGEGS---FP---------E-------------DLQADVQVLGAN--------M-----SALGLSQKP-----IYLHS WD11 553-589 ----------------------E--------RNGGGEGLDTFETVP---EA---------A-------------P---------AE--------L-----KEPPIEDQL-----AFHTL WD12 590-633 -W-----P--------------E--------SHKLYGHGNELFSLC---SD---------H-------------K---------GN--------L-----VASSCKAQSASMAEIWLWE WD13 637-675 -W-----K--------------A--------VGRLQSHSLTVTHLE---FS---------Y-------------D---------DT--------L-----LLSVSRDRH-----FSVFS WD14 686-724 -H-----K--------------L--------MAKVEAHKRIIWACS---WN---------P-------------F---------GH--------Q-----FATSSRDKT-----VKIWS WD15 725-774 VENDARIK--------------Q--------ILVLPPFGSSVTAVA---WT---------G-------------L---------DR--------NEKSGCVAVGMESGL-----IELSN WD16 783-837 -G-----T--------------TATAALALRLEPFMCHVSAVNRLA---WR---------P-------------T---------EKCESNQSLRW-----LTSCGDDNC-----VRVFN WD40 Template TG-----E--------------C--------LRTLSGHTSGVTSVS---FS---------P-------------D---------GK--------R-----LVSGSEDGT-----IKVWD |
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