Input parameters:

  Query = AT1G49910.1 (Len=339)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G49910.1, Len=339):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTLVPAIGRELSNPPSDGISNLRFSNNSDHLLVSSWDKSVRLYDANGDLMRGEFKHGGAVLDCCFHDDSSGFSVCADTKV 80  
WD40-rpts              (_______________WD 1_______________)  (________________WD 2_____________

Query       81 RRIDFNAGKEDVLGTHEKPVRCVEYSYAAGQVITGSWDKTIKCWDPRGASGTERTQIGTYMQPERVNSLSLVGNRLVVAT 160 
WD40-rpts      ___)  (_________________WD 3________________)     (_________________WD 4________

Query      161 AGRHVNIYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVSMEFFDLSEAAQAKKYAFKCHRKSEDGRDIV 240 
WD40-rpts      ________)     (__________________WD 5_________________)      (__________________

Query      241 YPVNAIAFHPIYGTFASGGCDGFVNIWDGNNKKRLYQYSKYPTSIAALSFSRDGGLLAVASSYTFEEGDKPHEPDAIFVR 320 
WD40-rpts      ___WD 6____________________)   (_________________WD 7________________)          

Query      321 SVNEIEVKPKPKVYPNPPV 339 
WD40-rpts                         

7 WD40-repeats found in QUERY=AT1G49910.1 (Len=339):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     9-44       8.07  447.85  5.7e-05       17.5%     50.08
  WD 2:  Seg  4    47-84       6.43  380.38  0.00047       20.0%     51.78
  WD 3:  Seg  8    87-125      8.88  481.58  2.0e-05       32.5%     51.71
  WD 4:  Seg 12   131-169      7.87  439.59  7.4e-05       20.0%     53.48
  WD 5:  Seg 16   175-215      6.27  373.63  0.00057       20.0%     51.26
  WD 6:  Seg 20   222-268      7.21  412.46  0.00017       22.5%     41.93
  WD 7:  Seg 24   272-310      7.82  437.74  7.8e-05       22.5%     39.57

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    9-44     ----R-------ELSNPPSDGISNLRFSNNSDHLLVSSWDK--SVRLYD
   WD 2   47-84     -GDLM-------RGEFKHGGAVLDCCFHDDSSGFSVCA-DT--KVRRID
   WD 3   87-125    -AGKE-------DVLGTHEKPVRCVEYSYAAGQVITGSWDK--TIKCWD
   WD 4  131-169    -GTER-------TQIGTYMQPERVNSLSLVGNRLVVATAGR--HVNIYD
   WD 5  175-215    -QPEQ-------RRESSLKYQTRCVRCYPNGTGYALSSVEGRVSMEFFD
   WD 6  222-268    AKKYAFKCHRKSEDGRDIVYPVNAIAFHPIYGTFASGGCDG--FVNIWD
   WD 7  272-310    -KKRL-------YQYSKYPTSIAALSFSRDGGLLAVASSYT--FEEGDK

   WD40 Template    TGECL-------RTLSGHTSGVTSVSFSPDGKRLVSGSEDG--TIKVWD