Input parameters:

  Query = AT1G51690.1 (Len=513)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G51690.1, Len=513):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNGGDEVVAASADPSLPLEWRFSQVFGERSAGEEVQEVDIISAIEFDNSGNHLATGDRGGRVVLFERTDTNNSSGTRREL 80  
WD40-rpts                               (__________________WD 1_________________)              

Query       81 EEADYPLRHPEFRYKTEFQSHDPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQDKKIKKICDMNSDP 160 
WD40-rpts                        (____________________WD 2____________________)                

Query      161 SRTVGNGTVASSSNSNITNSCLVNGGVSEVNNSLCNDFSLPAGGISSLRLPVVVTSHESSPVARCRRVYAHAHDYHINSI 240 
WD40-rpts                (__________________WD 3__________________) (_____________________WD 4_

Query      241 SNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPAKMEDLSEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCD 320 
WD40-rpts      ____________________)             (________________WD 5________________)        

Query      321 SHSKLFEEPEQAGPKSFFTEIIASVSDIKFAKEGRYLLSRDYMTLKLWDINMDAGPVATFQVHEYLKPKLCDLYENDSIF 400 
WD40-rpts          (____________________WD 6___________________)                   (___________

Query      401 DKFECCISGNGLRAATGSYSNLFRVFGVAPGSTETATLEASRNPMRRHVPIPSRPSRALSSITRVVSRGSESPGVDGNTN 480 
WD40-rpts      ______WD 7________________)    (_________________WD 8________________)          

Query      481 ALDYTTKLLHLAWHPNENSIACAAANSLYMYYA 513 
WD40-rpts                                       

8 WD40-repeats found in QUERY=AT1G51690.1 (Len=513):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    26-66       7.73  433.80  8.9e-05       17.5%     40.08
  WD 2:  Seg  7    99-144      4.96  319.47  0.00308       15.0%     45.49
  WD 3:  Seg 12   171-212      6.28  374.23  0.00056       10.0%     33.33
  WD 4:  Seg 16   214-261      5.75  352.11  0.00112       22.5%     45.98
  WD 5:  Seg 21   275-312      6.17  369.67  0.00065       22.5%     43.45
  WD 6:  Seg 24   325-369      6.45  381.24  0.00045       25.0%     41.92
  WD 7:  Seg 28   389-427      6.24  372.34  0.00060       17.5%     46.59
  WD 8:  Seg 32   432-470      6.18  370.12  0.00064       10.0%     42.38

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   26-66     FGE-----RSAG----E---------EVQEVDIISAIEF--DNSG-NHLATGDRGGRVVLFE
   WD 2   99-144    QSH------DPEFDYLK---------SLEIEEKINKIRWCQTANG-ALFLLSTNDKTIKFWK
   WD 3  171-212    SSS------NSN----I-------TNSCLVNGGVSEVNN--SLCN-DFSLPAGGISSLRLPV
   WD 4  214-261    VTS------HES----SPVARCRRVYAHAHDYHINSISN--NSDG-ETFISAD-DLRINLWN
   WD 5  275-312    ---------KPA----K---------MEDLSEVITSAEF--HPTHCNMLAYSSSKGSIRLID
   WD 6  325-369    LFEEPEQAGPKS----F---------FTEIIASVSDIKF--AKEG-RYLLSRD-YMTLKLWD
   WD 7  389-427    -KL------CDL----Y---------ENDSIFDKFECCI--SGNG-LRAATGSYSNLFRVFG
   WD 8  432-470    -ST------ETA----T---------LEASRNPMRRHVP--IPSR-PSRALSSITRVVSRGS

   WD40 Template    TGE------CLR----T---------LSGHTSGVTSVSF--SPDG-KRLVSGSEDGTIKVWD