Input parameters:

  Query = AT1G51690.2 (Len=512)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G51690.2, Len=512):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNGGDEVVAASADPSLPLEWRFSQVFGERSAGEEVQEVDIISAIEFDNSGNHLATGDRGGRVVLFERTDTNNSSGTRREL 80  
WD40-rpts                               (__________________WD 1_________________)              

Query       81 EEADYPLRHPEFRYKTEFQSHDPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQDKKIKKICDMNSDP 160 
WD40-rpts                     (______________________WD 2_____________________)                

Query      161 SRTVGNGTVASSSNSNITNSCLVNGGVSEVNNSLCNDFSLPAGGISSLRLPVVTSHESSPVARCRRVYAHAHDYHINSIS 240 
WD40-rpts                       (_______________WD 3______________)(_____________________WD 4__

Query      241 NNSDGETFISADDLRINLWNLEISNQSFNIVDVKPAKMEDLSEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDS 320 
WD40-rpts      ___________________)             (________________WD 5________________)         

Query      321 HSKLFEEPEQAGPKSFFTEIIASVSDIKFAKEGRYLLSRDYMTLKLWDINMDAGPVATFQVHEYLKPKLCDLYENDSIFD 400 
WD40-rpts                (________________WD 6________________)                   (____________

Query      401 KFECCISGNGLRAATGSYSNLFRVFGVAPGSTETATLEASRNPMRRHVPIPSRPSRALSSITRVVSRGSESPGVDGNTNA 480 
WD40-rpts      _____WD 7________________)    (_________________WD 8________________)           

Query      481 LDYTTKLLHLAWHPNENSIACAAANSLYMYYA 512 
WD40-rpts                                      

8 WD40-repeats found in QUERY=AT1G51690.2 (Len=512):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    26-66       7.80  436.84  8.1e-05       17.5%     38.16
  WD 2:  Seg  7    96-144      4.79  312.52  0.00382       17.5%     42.97
  WD 3:  Seg 12   178-212      5.56  344.13  0.00143       12.5%     32.50
  WD 4:  Seg 15   213-260      5.94  360.13  0.00087       22.5%     52.94
  WD 5:  Seg 20   274-311      6.19  370.54  0.00063       22.5%     42.48
  WD 6:  Seg 23   331-368      5.48  341.16  0.00157       22.5%     42.41
  WD 7:  Seg 27   388-426      6.26  373.43  0.00058       17.5%     44.10
  WD 8:  Seg 30   431-469      6.25  372.88  0.00059       10.0%     41.46

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   26-66     FGE--------RSAGEEV-------QEVDIISAIEF--DNSG-NHLATGDRGGRVVLFE
   WD 2   96-144    TEF---------QSHDPEFDYLKSLEIEEKINKIRWCQTANG-ALFLLSTNDKTIKFWK
   WD 3  178-212    T--------------NSC-------LVNGGVSEVNN--SLCN-DFSLPAGGISSLRLPV
   WD 4  213-260    VTSHESSPVARCRRVYAH-------AHDYHINSISN--NSDG-ETFISAD-DLRINLWN
   WD 5  274-311    ------------KPAKME-------DLSEVITSAEF--HPTHCNMLAYSSSKGSIRLID
   WD 6  331-368    -AG---------PKSFFT-------EIIASVSDIKF--AKEG-RYLLSRD-YMTLKLWD
   WD 7  388-426    -KL---------CDLYEN-------DSIFDKFECCI--SGNG-LRAATGSYSNLFRVFG
   WD 8  431-469    -ST---------ETATLE-------ASRNPMRRHVP--IPSR-PSRALSSITRVVSRGS

   WD40 Template    TGE---------CLRTLS-------GHTSGVTSVSF--SPDG-KRLVSGSEDGTIKVWD