Input parameters:

  Query = AT1G52730.1 (Len=343)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G52730.1, Len=343):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEKKKVTIPQVCHGHSRPVVDLFYSPITPDGFFLISASKDSHPMLRNGETGDWIGTFEGHKGAVWSSCLDNNALRAASAS 80  
WD40-rpts            (__________________WD 1_________________)   (_________________WD 2________

Query       81 ADFSAKLWDALTGDVLHSFEHKHIVRACAFSEDTKSLLTGGFEKILRVFDMNRLDAPPTEVDKSPGSIRTLTWLHSDQTI 160 
WD40-rpts      ________)   (________________WD 3________________)(___________________WD 4______

Query      161 LSSCTDIGGVRLWDVRSGKIVQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYDMPCNIESASLEPKSG 240 
WD40-rpts      _____________)   (________________WD 5_______________)   (_________________WD 6_

Query      241 EKFVAGGEDMWVRVFDFYTGEEIGCNKGHHGPVHCVRFTPTGLSYASGSEDGTIRIWQTTPANPEENETSSRRVKHSVDE 320 
WD40-rpts      _______________)   (_________________WD 7________________)                      

Query      321 VSKKIEGFHINKEGKTAEKPSDT 343 
WD40-rpts                             

7 WD40-repeats found in QUERY=AT1G52730.1 (Len=343):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     7-47       7.60  428.40  0.00010       30.0%     47.00
  WD 2:  Seg  5    51-89       9.70  515.40  7.0e-06       32.5%     56.58
  WD 3:  Seg  9    93-130      8.14  450.91  5.2e-05       30.0%     53.87
  WD 4:  Seg 13   131-174      6.74  393.03  0.00031       15.0%     54.45
  WD 5:  Seg 17   178-214      7.02  404.79  0.00022       35.0%     53.48
  WD 6:  Seg 21   218-256      8.54  467.52  3.1e-05       17.5%     57.50
  WD 7:  Seg 25   260-298     10.28  539.42  3.3e-06       45.0%     57.47

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    7-47     T-----IPQVCHGHSRPVVDLFY-SPITPDGFFLISASKDSHPMLRN
   WD 2   51-89     -GD---WIGTFEGHKGAVWSSCL-DN---NALRAASASADFSAKLWD
   WD 3   93-130    -GD---VLHSF-EHKHIVRACAF-SE---DTKSLLTGGFEKILRVFD
   WD 4  131-174    MNRLDAPPTEVDKSPGSIRTLTWLHS---DQTILSSCTDIGGVRLWD
   WD 5  178-214    -GK---IVQTLETK-SPVTSAEV-SQ---DGRYITTAD-GSTVKFWD
   WD 6  218-256    -FG---LVKSYDMPCNIESASLE-PK---SGEKFVAGGEDMWVRVFD
   WD 7  260-298    -GE---EIGCNKGHHGPVHCVRF-TP---TGLSYASGSEDGTIRIWQ

   WD40 Template    TGE---CLRTLSGHTSGVTSVSF-SP---DGKRLVSGSEDGTIKVWD