Input parameters:

  Query = AT1G52730.2 (Len=343)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G52730.2, Len=343):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEKKKVTIPQVCHGHSRPVVDLFYSPITPDGFFLISASKDSHPMLRNGETGDWIGTFEGHKGAVWSSCLDNNALRAASAS 80  
WD40-rpts          (___________________WD 1__________________)   (_________________WD 2________

Query       81 ADFSAKLWDALTGDVLHSFEHKHIVRACAFSEDTKSLLTGGFEKILRVFDMNRLDAPPTEVDKSPGSIRTLTWLHSDQTI 160 
WD40-rpts      ________)   (________________WD 3________________)(___________________WD 4______

Query      161 LSSCTDIGGVRLWDVRSGKIVQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYDMPCNIESASLEPKSG 240 
WD40-rpts      _____________)   (________________WD 5_______________)   (_________________WD 6_

Query      241 EKFVAGGEDMWVRVFDFYTGEEIGCNKGHHGPVHCVRFTPTGLSYASGSEDGTIRIWQTTPANPEENETSSRRVKHSVDE 320 
WD40-rpts      _______________)   (_________________WD 7________________)                      

Query      321 VSKKIEGFHINKEGKTAEKPSDT 343 
WD40-rpts                             

7 WD40-repeats found in QUERY=AT1G52730.2 (Len=343):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     5-47       7.87  439.77  7.4e-05       27.5%     52.01
  WD 2:  Seg  5    51-89       9.72  516.05  6.9e-06       32.5%     52.17
  WD 3:  Seg  9    93-130      8.07  447.92  5.7e-05       30.0%     52.97
  WD 4:  Seg 13   131-174      6.83  396.63  0.00028       15.0%     51.34
  WD 5:  Seg 17   178-214      7.11  408.42  0.00019       35.0%     52.32
  WD 6:  Seg 21   218-256      6.77  394.51  0.00030       25.0%     52.40
  WD 7:  Seg 25   260-298     10.32  540.86  3.2e-06       45.0%     54.06

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    5-47     KVT---IPQVCHGHSRPVVDLFY-SPITPDGFFLISASKDSHPMLRN
   WD 2   51-89     -GD---WIGTFEGHKGAVWSSCL-DN---NALRAASASADFSAKLWD
   WD 3   93-130    -GD---VLHSF-EHKHIVRACAF-SE---DTKSLLTGGFEKILRVFD
   WD 4  131-174    MNRLDAPPTEVDKSPGSIRTLTWLHS---DQTILSSCTDIGGVRLWD
   WD 5  178-214    -GK---IVQTLETK-SPVTSAEV-SQ---DGRYITTAD-GSTVKFWD
   WD 6  218-256    -FG---LVKSYDMPCN-IESASL-EP--KSGEKFVAGGEDMWVRVFD
   WD 7  260-298    -GE---EIGCNKGHHGPVHCVRF-TP---TGLSYASGSEDGTIRIWQ

   WD40 Template    TGE---CLRTLSGHTSGVTSVSF-SP---DGKRLVSGSEDGTIKVWD