Input parameters:

  Query = AT1G53090.1 (Len=794)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G53090.1, Len=794):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKGSSESSSRGLNNTSGVSEFCTDGSKSLSHIDYVRSLLGSHKEANLGGLDDDSIVRALECEDVSLRQWLDNPDRSVDAF 80  
WD40-rpts                                                                                      

Query       81 ECFHVFRQIVEIVNAAHSQGIVVHNVRPSCFVMSSFNNVSFIESASCSDSGSDEDATTKSREIGSSRQEEILSERRSKQQ 160 
WD40-rpts                                                                                      

Query      161 EEVKKQPFPMKQILAMEMSWYTSHEEDNGSLCNCASDIYRLGVLLFELFCPVSSREEKSRTMSSLRHRVLPPQILLNWPK 240 
WD40-rpts                                                                                      

Query      241 EASFCLWLLHPEPSCRPSMSELLQSEFINEPRENLEEREAAMELRDRIEEQELLLEFLFLIQQRKQEAADKLQDTISLLS 320 
WD40-rpts                                                                                      

Query      321 SDIDQVVKRQLVLQQKGRDVRSFLASRKRIRQGAETTAAEEENDDNSIDEESKLDDTLESTLLESSRLMRNLKKLESVYF 400 
WD40-rpts                                                                                      

Query      401 ATRYRQIKAATAAEKPLARYYSALSCNGRSSEKSSMSQPSKDPINDSRQGGWIDPFLEGLCKYLSFSKLRVKADLKQGDL 480 
WD40-rpts                                                                                (_____

Query      481 LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQV 560 
WD40-rpts      ___________WD 1________________)(______________________WD 2_____________________

Query      561 WDVARNQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSETGRSLAFGSAD 640 
WD40-rpts      _)   (_________________WD 3_________________)   (_________________WD 4__________

Query      641 HKVYYYDLRNPKLPLCTMIGHHKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVS 720 
WD40-rpts      ______)(__________________WD 5__________________)         (_________________WD 6

Query      721 DGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSELEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEMV 794 
WD40-rpts      ________________)                (_________________WD 7________________)  

7 WD40-repeats found in QUERY=AT1G53090.1 (Len=794):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7   475-512      7.62  429.51  0.00010       17.5%     52.20
  WD 2:  Seg 11   513-562      5.89  357.79  0.00094       17.5%     48.90
  WD 3:  Seg 15   566-605      8.64  471.77  2.7e-05       32.5%     55.86
  WD 4:  Seg 19   609-647      8.07  447.86  5.7e-05       22.5%     54.97
  WD 5:  Seg 23   648-689      7.94  442.53  6.8e-05       42.5%     44.06
  WD 6:  Seg 26   699-737      7.74  434.27  8.7e-05       25.0%     51.04
  WD 7:  Seg 30   754-792      6.27  373.47  0.00058       17.5%     46.92

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  475-512    LKQ-----G---------DLLNSSNLVCAIGF-D-RDGEFFATAGVNKKIKIFE
   WD 2  513-562    CES---IIKDGRDIHYPVVELASRSKLSGICWNS-YIKSQVASSNFEGVVQVWD
   WD 3  566-605    -NQ---LVT---------EMKEHEKRVWSIDY-SSADPTLLASGSDDGSVKLWS
   WD 4  609-647    -GV---SIG---------TIKTKANICCVQFP-S-ETGRSLAFGSADHKVYYYD
   WD 5  648-689    LRNPKLPLC---------TMIGHHKTVSYVRF---VDSSTLVSSSTDNTLKLWD
   WD 6  699-737    -ET---PLH---------SFMGHTNVKNFVGL-S-VSDGYIATGSETNEVFVYH
   WD 7  754-792    -PV---SEL---------EVDDASQFISSVCW-R-GQSSTLVAANSTGNIKILE

   WD40 Template    TGE---CLR---------TLSGHTSGVTSVSF-S-PDGKRLVSGSEDGTIKVWD