Input parameters:

  Query = AT1G53090.2 (Len=794)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G53090.2, Len=794):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKGSSESSSRGLNNTSGVSEFCTDGSKSLSHIDYVRSLLGSHKEANLGGLDDDSIVRALECEDVSLRQWLDNPDRSVDAF 80  
WD40-rpts                                                                                      

Query       81 ECFHVFRQIVEIVNAAHSQGIVVHNVRPSCFVMSSFNNVSFIESASCSDSGSDEDATTKSREIGSSRQEEILSERRSKQQ 160 
WD40-rpts                                                                                      

Query      161 EEVKKQPFPMKQILAMEMSWYTSHEEDNGSLCNCASDIYRLGVLLFELFCPVSSREEKSRTMSSLRHRVLPPQILLNWPK 240 
WD40-rpts                                                                                      

Query      241 EASFCLWLLHPEPSCRPSMSELLQSEFINEPRENLEEREAAMELRDRIEEQELLLEFLFLIQQRKQEAADKLQDTISLLS 320 
WD40-rpts                                                                                      

Query      321 SDIDQVVKRQLVLQQKGRDVRSFLASRKRIRQGAETTAAEEENDDNSIDEESKLDDTLESTLLESSRLMRNLKKLESVYF 400 
WD40-rpts                                                                                      

Query      401 ATRYRQIKAATAAEKPLARYYSALSCNGRSSEKSSMSQPSKDPINDSRQGGWIDPFLEGLCKYLSFSKLRVKADLKQGDL 480 
WD40-rpts                                                                       (______________

Query      481 LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQV 560 
WD40-rpts      _______WD 1____________________)(______________________WD 2_____________________

Query      561 WDVARNQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSETGRSLAFGSAD 640 
WD40-rpts      _)   (_________________WD 3_________________)   (_________________WD 4__________

Query      641 HKVYYYDLRNPKLPLCTMIGHHKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVS 720 
WD40-rpts      ______)(__________________WD 5__________________)         (_________________WD 6

Query      721 DGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSELEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEMV 794 
WD40-rpts      ________________)                (_________________WD 7________________)  

7 WD40-repeats found in QUERY=AT1G53090.2 (Len=794):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   466-512      7.62  429.46  0.00010       17.5%     53.77
  WD 2:  Seg 10   513-562      6.12  367.27  0.00070       17.5%     49.24
  WD 3:  Seg 14   566-605      8.66  472.55  2.7e-05       32.5%     54.55
  WD 4:  Seg 18   609-647      8.29  457.30  4.3e-05       22.5%     56.08
  WD 5:  Seg 22   648-689      7.92  441.90  6.9e-05       42.5%     49.99
  WD 6:  Seg 26   699-737      7.85  438.99  7.5e-05       25.0%     54.75
  WD 7:  Seg 30   754-792      6.46  381.71  0.00045       17.5%     49.86

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  466-512    FSK---LRVKADLKQG---------DLLNSSNLVCAIGF-D-RDGEFFATAGVNKKIKIFE
   WD 2  513-562    CES---II-------KDGRDIHYPVVELASRSKLSGICWNS-YIKSQVASSNFEGVVQVWD
   WD 3  566-605    -NQ---LV-------T---------EMKEHEKRVWSIDY-SSADPTLLASGSDDGSVKLWS
   WD 4  609-647    -GV---SI-------G---------TIKTKANICCVQFP-S-ETGRSLAFGSADHKVYYYD
   WD 5  648-689    LRNPKLPL-------C---------TMIGHHKTVSYVRF---VDSSTLVSSSTDNTLKLWD
   WD 6  699-737    -ET---PL-------H---------SFMGHTNVKNFVGL-S-VSDGYIATGSETNEVFVYH
   WD 7  754-792    -PV---SE-------L---------EVDDASQFISSVCW-R-GQSSTLVAANSTGNIKILE

   WD40 Template    TGE---CL-------R---------TLSGHTSGVTSVSF-S-PDGKRLVSGSEDGTIKVWD