Input parameters:

  Query = AT1G54710.1 (Len=927)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G54710.1, Len=927):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKSNSKVNINNNGDNHNQTKNNGTNGFLPNSLKFISTCIRTASSGVRSASASVAASLSSDSHELKDQVLWSSFDRLHTSE 80  
WD40-rpts                                                                                      

Query       81 SSFKNVLLLGYTNGFQVLDIDDSNDVTEFVSRRDDPVTFLQMQPLPAKCDGVEGFRSSHPILLAVADEAKGSGPIVTSRD 160 
WD40-rpts                                                                     (________________

Query      161 GSVRNGYEDPLALSPTVVRFYSLRSHNYVHVLRFRSTVYMVRCSPRIVAVGLGSQIYCFDALTLENKFSVLSYPVPQLGN 240 
WD40-rpts      _WD 1________________)                                                          

Query      241 QGISGVNVGYGPMAVGARWLAYASNSPLSSSIGRLSPQNVTPPGVSPSTSPNNGNLVARYAMESSKHLAAGLLNLGDKGY 320 
WD40-rpts                                                                                      

Query      321 KTISKYCQDLKHDGPGPSLSSSPGRKVGRVGSHSAESDVVGTVIVKDFESRAIIAQFRAHTSPISALCFDPSGTLLVTAS 400 
WD40-rpts           (__________________WD 2__________________)   (_________________WD 3________

Query      401 IHGNNINVFRIMPTPTKNGPGAQSYDWSSSHVPLYKLHRGMTSAVIQDICFSSYSQWIAIVSSKSTCHIYVLSPFGGENV 480 
WD40-rpts      _________)  (___________________________WD 4__________________________)   (_____

Query      481 LEIRNSQFDGPTLAPTLSLPWWSSPSFMTTHFSYPPPASVTLSVVSRIKCNNFFHAASSVVGKPTFPSGCLAAVFHQSVP 560 
WD40-rpts      ____________WD 5________________)                                               

Query      561 QESQSSSPALDYLLVYTPSGHVVQYKLIPSLGGDQAESNTRNGATSGLTSEEELRVKVEPVQCWDVCRRADWPEREENIC 640 
WD40-rpts                                                                                      

Query      641 GLTYGGRKNAELTVDTSDSEDQTKPLEKHHVYLANAEVLINSGRKPIWQNSEISFYPMYPPDSDGKNLNSHQGGGETEIG 720 
WD40-rpts                                                                                      

Query      721 KVSANEVDIRRKDLLPVYDNFHSVYTSMRNRGFSGERDSDSSSSSDPGQVKEMHPFNGMVYPEDEERRGSAHFALTPNQN 800 
WD40-rpts                                                                                      

Query      801 PHTGIVTFKQPVVSISSAVKDTDYIDDDAHVLPKNASLPAETKIENSSGISGDSNVSSNRSDMSMNAADEGEGPIDGSPN 880 
WD40-rpts                                                                                      

Query      881 FEQFFEEVVSNETVTETEHKDAPSDGKLDDDEDDDMLGGVFAFSEEG 927 
WD40-rpts                                                     

5 WD40-repeats found in QUERY=AT1G54710.1 (Len=927):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9   144-182      3.76  270.08  0.01418        2.5%     -0.26
  WD 2:  Seg 19   326-367      3.10  242.85  0.03273       17.5%     -5.73
  WD 3:  Seg 20   371-410      6.49  382.90  0.00043       30.0%     54.94
  WD 4:  Seg 24   413-471      4.11  284.29  0.00915       10.0%     37.92
  WD 5:  Seg 28   475-513      3.55  261.38  0.01855       10.0%     -5.18

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  144-182    -AVADEA--KGSGP-------------------IVTSRDGSVRNGYEDPLALSPTV-VRFYS
   WD 2  326-367    YCQDLKHDGPGPSL-------------------SSSPGRKVGRVGSHSAESDVVGT-VIVKD
   WD 3  371-410    -RAIIAQ--FRAHT-------------------SPISALCFDPSGTLLVTASIHGNNINVFR
   WD 4  413-471    PTPTKNG--PGAQSYDWSSSHVPLYKLHRGMTSAVIQDICFSSYSQWIAIVSSKST-CHIYV
   WD 5  475-513    -FGGENV--LEIRN-------------------SQFDGPTLAPTLSLPWWSSPSFM-TTHFS

   WD40 Template    TGECLRT--LSGHT-------------------SGVTSVSFSPDGKRLVSGSEDGT-IKVWD