Input parameters:

  Query = AT1G55680.1 (Len=445)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G55680.1, Len=445):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSNYQGDDAEYMEDVDDEMDEDDLDEDFRGDDMAASDSDVDEFDYSNNKIADTSADQARKGKDIQGIPWDRLSITRETYR 80  
WD40-rpts                                                                                      

Query       81 QTRLEQYKNYENVPNSGESSGKDCMATQKGALFYDFWRNTRSIKSSILHFQLRNLVWATSKHDVYLMSQYLVSHYSTLTS 160 
WD40-rpts                                          (________________________WD 1_______________

Query      161 GKHDVLNVQGHVSPSEKHPGSLLEGFTKTQVSTLAVRDKFLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAIEIY 240 
WD40-rpts      _________)(____________________WD 2___________________)(_____________________WD 

Query      241 NKPSGALHFTASNNDCGVRDFDMERYQLVNQFRFPWPVNHTSLSPDGKLLTIVGDNPESLLVDPNTGKTLATLSGHLDFS 320 
WD40-rpts      3____________________)(__________________WD 4_________________)   (_____________

Query      321 FASAWHPDGFTFSTGNQDKTCRVWDIRNLSKSVAVLRGNLGAIRSIRYTSDGKYMAMAEPADFVHVYDVSNGYETEQEID 400 
WD40-rpts      ____WD 5________________)    (_________________WD 6________________)   (________

Query      401 FFGEISGISFSPDTEALFIGVWDRTYGSLIEYSRRHNYSYLDSFL 445 
WD40-rpts      _________WD 7________________)               

7 WD40-repeats found in QUERY=AT1G55680.1 (Len=445):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   117-170      3.26  249.17  0.02698       20.0%     22.75
  WD 2:  Seg  6   171-215      5.92  359.07  0.00090       17.5%     43.26
  WD 3:  Seg 10   216-262      4.40  296.30  0.00631       12.5%     47.93
  WD 4:  Seg 14   263-303      7.05  405.82  0.00021       25.0%     57.18
  WD 5:  Seg 18   307-345     10.28  539.23  3.4e-06       40.0%     52.59
  WD 6:  Seg 22   350-388      8.69  473.43  2.6e-05       20.0%     53.66
  WD 7:  Seg 26   392-430      6.33  376.04  0.00053       25.0%     50.52

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  117-170    WRNTRSIKSSILHFQLRNL-V-----WATS------KHDVYLMSQYLVSHYS-TLTSGKHD-VLNVQG
   WD 2  171-215    HV---------------SP-SEKHPGSLLE------GFTKTQVSTLAVRDKF-LVAGGFQGELICKHL
   WD 3  216-262    DR---------------PG-V-----SFCSRTTYDDNAITNAIEIYNKPSGALHFTASNNDCGVRDFD
   WD 4  263-303    ME---------------RYQL-----VNQF------RFPWPVNHTSLSPDGK-LLTIVGDNPESLLVD
   WD 5  307-345    -G---------------KT-L-----ATLS------GHLDFSFASAWHPDGF-TFSTGNQDKTCRVWD
   WD 6  350-388    -S---------------KS-V-----AVLR------GNLGAIRSIRYTSDGK-YMAMAEPADFVHVYD
   WD 7  392-430    -G---------------YE-T-----EQEI------DFFGEISGISFSPDTE-ALFIGVWDRTYGSLI

   WD40 Template    TG---------------EC-L-----RTLS------GHTSGVTSVSFSPDGK-RLVSGSEDGTIKVWD