Accession: AT1G58230.1 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = AT1G58230.1 (Len=2604)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G58230.1, Len=2604):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MESDSVAGSASSSDAAASHLPSVSVLLDALEQSASTPRIANGLSQRLLRSLQFSNENKLSFKALNGACRVLRLACIQAKE 80  
WD40-rpts                                                                                      

Query       81 SRKSGCVSPLVESSDCGVIVDSPHKKSDSSHTEDCWFECVESCVGIFTEFFSSTNDAKVYVLRSSVCVDCLFELFWEKAV 160 
WD40-rpts                                                                                      

Query      161 RNNVMKLIIDLMKIRPLCEEDKSAKLQVCSKYLETFTQVKERENDSVDLSVDLLAGMRDLIKSDSRYYQALFREGECFLH 240 
WD40-rpts                                                                                      

Query      241 IVSLLNGNLDEANGEKLVLNVLQTLTSLLANNDTSKFAFKALAGKGYQTLQSLLLDFFQWKPTQRLLDALLDMLVDGKFD 320 
WD40-rpts                                                                                      

Query      321 DKGSALIKNEDVIILYLNVLQKSSESLQCYGLNLFQQLLRDSISNRASCVRAGMLHLLLDWFSLENDDSVILKITQLTQT 400 
WD40-rpts                                                                                      

Query      401 IGGHSISGKDIRKIFALLRSERVGNQQRYRSLLLACLLSMLNEKGPTGFFDMNGVESGIVIRTPVQWPANKGFSFCCWLR 480 
WD40-rpts                                                                                      

Query      481 VESFPGDGKMGIFSFMSKNGKGCFAALGKDGLSYVSLNLKRQCVNVHTNLVCKKWHFICVSHSIGRAFWGGSLLRCYVNG 560 
WD40-rpts                                                                                      

Query      561 DLVSSERCSYPKVTDVLTSCLIGTRITLPHIQDNDGLESIRDVFPFFGQIGPVYLFNDSLSSEQVQAIYSLGPSYMYAFL 640 
WD40-rpts                                                                                      

Query      641 ENEMTCPFSDNPFPSGILDGKDGLASKVSFGLNAQASDGRRLFNVSRVSDHLQERLAFEADIMVGTQLCSRRLLQQIIYC 720 
WD40-rpts                                                                                      

Query      721 VGGISVFFPLITQSDRCESETLNEETSAMPTKERMTAEVIELIASVLDENPANQQQMHLLAGFPILGFLLQSIQPKQLNL 800 
WD40-rpts                                                                                      

Query      801 ETLSSLKHLFNVISSSGFAEQLVEDAISSIFLNPHIWLHAAYNVQRELYMFLIQQLDNDPRLLGSLCRLPRVIDIVWNFY 880 
WD40-rpts                                                                                      

Query      881 WESERYCKGSKPLMHPTRTIAERPSRDEIHKIRLLLLSLGEMSLRHNISSGDVKALTAFFETCQDVACIEDVLHMVIRAI 960 
WD40-rpts                                                                                      

Query      961 SQTSVLVSFLEQVNLIGGCHIFVDLLQRDYEPIRLLSLQFLGRLLYDVPSERKGPKFFNLAVGRTKSLSQGHKKIGARTQ 1040
WD40-rpts                                                                                      

Query     1041 PIFLAMSDRLFQYPQTDNLRATLFDVLLGGASPKQVLQKHNQVDKHRSKPSNSHFFLPQIFVFIFEFLSGCKDGLARMKI 1120
WD40-rpts                                                                                      

Query     1121 ISDILDLLDSNPMNVEALMEFGWSAWLTASMKLDVIKDYRSELLNHDDLALNEQHFVRGLFCVVLCHYILSVKGGWQQLE 1200
WD40-rpts                                                                                      

Query     1201 ETVNFILLQSEHNDVPYRSFLRDLYEDLIQRLVELSSEDNIFLSHPCRDNVLYLLRLVDEMLVREFGSRLLFPAISTDFS 1280
WD40-rpts                                                                                      

Query     1281 EDLLQLGNREDPTLGLDESFQRFLTEEISRNTECQQSCTTVTELMTNERWWNLYDNLWKIICDINGRGPVKMSPKSLATG 1360
WD40-rpts                                                                                      

Query     1361 PSIGQRARGLVESLNVPAAEMAAVVVSGGIGSALSGKMNKNVDKAMLLRGEKCPRIVFRLVTLYLCMSSLEKATRCVQQV 1440
WD40-rpts                                                                                      

Query     1441 TSLLPSFLAADDEQSKSRLHLFIGCLLYVRSQYGKLDDGARFHVISHLIRETVSCGKSILATSGMNKDDSSDSGGIFKEM 1520
WD40-rpts                                                                                      

Query     1521 GSIQNLIHKDRVLAAVTDETTYMKTLISDRTRQVQALGERNNETLSIECNSKKAFDGELQNVLKTVVTWDENRRVSVQLS 1600
WD40-rpts                                                                                      

Query     1601 HEEQQQNVTEKWIHMLRSLMDERGPWSATPFPNNILNRWKLDRTEDSWRRRPKLRRNYHFDERLCHPPSTSTATENETSN 1680
WD40-rpts                                                                                      

Query     1681 VINESKSGVIHIPEQMKKFLLKGIRRITDEGGSDSCENDSSQAEQSFMDTSADIQFSELVRTSSGLKDVVQDKVDASSLE 1760
WD40-rpts                                                                                      

Query     1761 VGTSEVLTSVPCVLVTPKRKLAGWLAVMKNVLHFSGEFLVEGTGGSAVFKNFSTSKGSDVTKAENKQNLVKWSSPYDSET 1840
WD40-rpts                                                                                      

Query     1841 FLDLESGNKNKKPLKKVKRHRRWKIGKVKSVHWTRYLLQYTALEIFFQESVPPVFLNFASQKNAKEVGMLIVSTRNEFLF 1920
WD40-rpts                                                                                      

Query     1921 PKNVPRDRTAMISFVDRRIAMEMAETARDRWRRREITNFEYLMILNTLAGRSYNDLTQYPVFPWVVADYSSETLDFSKAS 2000
WD40-rpts                                                                                      

Query     2001 TFRDLSKPVGALDTRRFEIFEDRYHSFSDPDIPSFYYGSHYSSMGSVLYYLLRLEPFTSLHRSLQGGKFDHADRLFQSVE 2080
WD40-rpts                                                                                      

Query     2081 GSFRNCLSNTSDVKELIPEFFYMPEFLVNSNSYHLGVKQDGEPLGEVCLPPWAKGSPEMFIARNREALESEYVSSHLHDW 2160
WD40-rpts                                                                                      

Query     2161 IDLIFGHKQRGKPAVEAANIFYYLTYEGAVDVENMEDQLQISAIEDQIANFGQTPIQIFRKKHPRRGPPIPIAHPLYFAP 2240
WD40-rpts                                                                                      

Query     2241 ASINLSSILPATTHSPSAVLYVGVVDSNIVLVNQGLTLSVKIWLTTQLHSGGNFTFSSAQDPFFGVGSDVLSPRNIGSPL 2320
WD40-rpts                                                                                      

Query     2321 ADNVELGSQCFAAMQMPLENFLVSCGNWENSFHVISLTDGRVVQSIRHHKDVVSCVAVTADSTILATGSYDTTVMVWDIL 2400
WD40-rpts                                             (_________________WD 1________________)  

Query     2401 RMRTPEKRVRNTHAEVLRKDIVIADAPSHILCGHDDIITCLYVSTDLDIVISGSKDGTCVFHTLREGRYIRSLKHPSGSA 2480
WD40-rpts                                      (_____________WD 2____________)   (_____________

Query     2481 VSKLAASHHGRIVLYGDDDLSLHLYSINGKHLASSESNGRINCLELSKCGEFLVSAGDQGQIIVRSMNTLEVVKRYNGAG 2560
WD40-rpts      ____WD 3_________________)(_________________WD 4_________________)   (__________

Query     2561 KIITSLTVTQEECFLAGTKDGALLVYSIENPQHRKPSPIWSIKS 2604
WD40-rpts      ______WD 5________________)

5 WD40-repeats found in QUERY=AT1G58230.1 (Len=2604):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 30  2360-2398     6.83  396.78  0.00028       32.5%     56.77
  WD 2:  Seg 35  2433-2463     4.21  288.74  0.00797       27.5%     47.36
  WD 3:  Seg 38  2467-2506     2.90  234.53  0.04217       22.5%     54.01
  WD 4:  Seg 42  2507-2546     4.32  293.13  0.00696       22.5%     54.12
  WD 5:  Seg 46  2550-2587     3.26  249.37  0.02681       22.5%     53.86

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 2360-2398   -GRVVQSIRHHK-DVVSCVAVTADSTILATGSYDTTVMVWD
   WD 2 2433-2463   ---------GHD-DIITCLYVSTDLDIVISGSKDGTCVFHT
   WD 3 2467-2506   -GRYIRSLKHPSGSAVSKLAASHHGRIVLYGDDDLSLHLYS
   WD 4 2507-2546   INGKHLASSESN-GRINCLELSKCGEFLVSAGDQGQIIVRS
   WD 5 2550-2587   -LEVVKRYNGAG-KIITSLTVTQEECFLA-GTKDGALLVYS

   WD40 Template    TGECLRTLSGHT-SGVTSVSFSPDGKRLVSGSEDGTIKVWD