Input parameters:

  Query = AT1G61210.1 (Len=1181)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G61210.1, Len=1181):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAKRGYKLQEFLAHSANVNCLSIGKKTSRLFITGGDDYKVNLWAIGKPTSLMSLCGHTSAVDSVAFDSAEVLVLAGASSG 80  
WD40-rpts         (__________________WD 1_________________)(__________________WD 2_____________

Query       81 VIKLWDVEEAKMVRAFTGHRSNCSAVEFHPFGEFLASGSSDANLKIWDIRKKGCIQTYKGHSRGISTIRFTPDGRWVVSG 160 
WD40-rpts      _____)   (_________________WD 3________________)   (_________________WD 4_______

Query      161 GLDNVVKVWDLTAGKLLHEFKFHEGPIRSLDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEATGVRSIKFHPDGRT 240 
WD40-rpts      _________)   (_________________WD 5________________)   (________________WD 6____

Query      241 LFCGLDDSLKVYSWEPVVCHDGVDMGWSTLGDLCISEGKLLGCSYYQNSVGIWVSDISQIEPYGIGSADKKECVEKILSA 320 
WD40-rpts      ____________)   (________________WD 7________________)   (___________________WD 

Query      321 LDDQSFDRIKSTPRRSSSPDYETKEIKNIYIDSTGGNSAVAHKSGSLSTPATSTGQAGDNKSLVVHSVVPRDSDIGKDSS 400 
WD40-rpts      8__________________)  (_________________WD 9________________)                   

Query      401 DSGKESITFSKTKPGMLLRPAYVRKTPTKFDETKKQSVAVGYLKKSGLDGEKKLDTETAFDSEMSGRNPYDADDSIIKSI 480 
WD40-rpts                                                 (___________________________WD10_____

Query      481 TNKFEQALLPESPTDEAKCMLLKPPRVQRSPSTKYNEARWATSTDSGALDSKKNGLESSRDMDLPTGLRDDRGSNPCEED 560 
WD40-rpts      _____________________)                                                          

Query      561 IENKSISSRSERVLSPEKAGDELKSLESPGGSKESKSVKVVRGVKVVSGRTRSLVERFERGEKITHSEDKAASATVVHSS 640 
WD40-rpts                                                                                      

Query      641 NSVEEEPLTASVQTVSMMPTQVMPVKLDQATNSTTVDVPVLSTRRTKSTPVRVMPVVLGRDTSMATDTPPVTSTRPDRTS 720 
WD40-rpts                                                                                      

Query      721 ATNLTSDVSGVTSKRQTRTSPAPVMPMILNQTTKMKSDEPSITSTWPDRTSATDLTSDVSGVISSRQTRTSPAPVMPMKL 800 
WD40-rpts                                                                                      

Query      801 NQKTKIKSDEPPITSTRPDRPSATNLTSDESPVTSTRQAKTSPAPVTPVILNQRQTTNMKSDEPPVISTRPLRTSSARVM 880 
WD40-rpts                                                                                      

Query      881 PVILNQASTTYDERPLSSSRSARTSPARIMPMKLNQADNMPSYEPPVALTRSARNSPARVIPVKLNQATNVTADASHIRS 960 
WD40-rpts                                                                                      

Query      961 RQRFSPTQTLATPAVFDQVTDMTLDETTKTQQSSDILTQKEEPQISGREDDGDIWEILMRTHSEVLNTLQSRLTKLQIVR 1040
WD40-rpts                                                                                      

Query     1041 HFWERSDIKGAIAALRKLSDHSVQADVINILTDKTEILTLDLFSQLAPVLTGLLGSKTERPVNVSLEMLLKLVAVFGTVI 1120
WD40-rpts                                                                                      

Query     1121 QSTVSARRVVGVDLHAEERLQICQSCSAELQKVQKILPLLTRRGGLIARKAQELNLVLQTP 1181
WD40-rpts                                                                   

10 WD40-repeats found in QUERY=AT1G61210.1 (Len=1181):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-44       7.51  424.95  0.00012       20.0%     55.39
  WD 2:  Seg  5    45-86       9.65  513.14  7.5e-06       42.5%     55.83
  WD 3:  Seg  9    90-128     10.25  538.25  3.5e-06       40.0%     54.50
  WD 4:  Seg 13   132-170     10.78  559.99  1.8e-06       42.5%     53.28
  WD 5:  Seg 17   174-212      9.64  512.96  7.6e-06       35.0%     54.03
  WD 6:  Seg 21   216-253      7.48  423.62  0.00012       32.5%     54.54
  WD 7:  Seg 25   257-294      5.47  340.48  0.00160       17.5%     53.49
  WD 8:  Seg 29   298-340      3.24  248.56  0.02749       12.5%     32.08
  WD 9:  Seg 33   343-381      6.52  384.12  0.00041       10.0%     30.92
  WD10:  Seg 39   444-502      3.86  274.13  0.01252       12.5%     -9.37

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    4-44     RGY--KL-------------------QEFLAHSANVNCLS---IGKKTSRLF-ITGGDDYKVNLWA
   WD 2   45-86     IGKPTSL-------------------MSLCGHTSAVDSVA---FDSA-EVLV-LAGASSGVIKLWD
   WD 3   90-128    -AK--MV-------------------RAFTGHRSNCSAVE---FHPF-GEFL-ASGSSDANLKIWD
   WD 4  132-170    -KG--CI-------------------QTYKGHSRGISTIR---FTPD-GRWV-VSGGLDNVVKVWD
   WD 5  174-212    -GK--LL-------------------HEFKFHEGPIRSLD---FHPL-EFLL-ATGSADRTVKFWD
   WD 6  216-253    -FE--LI-------------------GSTRPEATGVRSIK---FHPD-GRTL-FCGL-DDSLKVYS
   WD 7  257-294    -VV--CH-------------------DGVDMGWSTLGDLC---IS-E-GKLL-GCSYYQNSVGIWV
   WD 8  298-340    -SQ--IE-------------------PYGIGSADKKECVEKILSALD-DQSFDRIKSTPRRSSSPD
   WD 9  343-381    -TK--EI-------------------KNIYIDSTGGNSAV---AHKS-GSLS-TPATSTGQAGDNK
   WD10  444-502    KKS--GLDGEKKLDTETAFDSEMSGRNPYDADDSIIKSIT---NKFE-QALL-PESPTDEAKCMLL

   WD40 Template    TGE--CL-------------------RTLSGHTSGVTSVS---FSPD-GKRL-VSGSEDGTIKVWD