Input parameters:

  Query = AT1G62020.1 (Len=1216)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G62020.1, Len=1216):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLTKFETKSNRVKGLSFHPKRPWILASLHSGVIQLWDYRMGTLIDRFDEHEGPVRGVHFHNSQPLFVSGGDDYKIKVWNY 80  
WD40-rpts      (________________WD 1_______________)   (_________________WD 2________________) 

Query       81 KNHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCVSVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160 
WD40-rpts        (_________________WD 3________________)   (_________________WD 4______________

Query      161 VWDIGALRKKTVSPADDIMRLTQMNSDLFGGVDAIVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE 240 
WD40-rpts      __)                              (_________________WD 5________________)(_______

Query      241 VDTLRGHMNNVSSVMFHAKQDIIVSNSEDKSIRVWDATKRTGLQTFRREHDRFWILAVHPEMNLLAAGHDSGMIVFKLER 320 
WD40-rpts      ____________WD 6___________________)   (________________WD 7________________)   

Query      321 ERPAFALSGDSLFYAKDRFLRYYEYSTQRDSQVIPIRRPGTPSLNQSPRTLSYSPTENAVLICSDLDGGSYELYIIPKDS 400 
WD40-rpts                                                                                      

Query      401 VGRSDVVQDAKRGTGGSAVFIARNRFAVLEKSTSQVLVKNLKNEVVKKSPLPIPTDAIFYAGTGNLLCRSEDKVVIFDLQ 480 
WD40-rpts                                                                                    (_

Query      481 QRLVLGELQTPFVRYVVWSSDMESVALLSKHTIIIASKKLVLQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDS 560 
WD40-rpts      ________________WD 8_________________)                                          

Query      561 GIIRTLDVPIYITKVSGNTIFCLDRDGKNKAITINATEYIFKLSLLRKRYDHVMSMIKNSQLCGQAMIAYLQQKGFPEVA 640 
WD40-rpts                                                                                      

Query      641 LHFVEDERIRFNLALESGNISVAVASATQINEKDHWYRLGVEALRQGNSGIVEFAYQQTKNFERLSFLYLITGNLDKLSK 720 
WD40-rpts                                                                                      

Query      721 LMKIAEVKNNVMGQFHNALYLGDVKERVKILENAGHLPLAYITASVHGLNDIAERLATELGDNVPSLPEGKTPSLLMPPT 800 
WD40-rpts                                                                                      

Query      801 PIMCGGDWPLLRVMKGIFEGGLESADRGGTVDEEDVEGDWGEELDINVDGMENRDIEDILAAAEAGEEENDEEGGWGLED 880 
WD40-rpts                                                                                      

Query      881 LVLPPELDTPKASANARSSVFVTPPQGMPVSQSWSQKSSLAAEQAAAGSFDTAMRLLHRQLGIKNFTPLKSMFLDLFNGS 960 
WD40-rpts                                                                                      

Query      961 HSYLRAFSSCPVVPLAIERGWSESSSPNVRSPPALVYDFSQLDEKLKSGYKATTTGKFTEALRLFLSILHTIPLVVVETR 1040
WD40-rpts                                                                                      

Query     1041 REVDEVKELIVIVKEYVLGLQMELKRREMKDDPVRQQELAAYFTHCNLQTPHLRLALLSAMGVCYKAKNLATASNFARRL 1120
WD40-rpts                                                                                      

Query     1121 LETSPVDSQAKMARQVVQAAERNMTDETKLNYDFRNPFVVCGSTYVPIYRGQKDVSCPYCTARFVPNQEGNICTVCDLAV 1200
WD40-rpts                                                                                      

Query     1201 IGADASGLLCSPSQVR 1216
WD40-rpts                      

8 WD40-repeats found in QUERY=AT1G62020.1 (Len=1216):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-37       5.01  321.63  0.00288       22.5%     46.82
  WD 2:  Seg  4    41-79       7.26  414.58  0.00016       32.5%     57.27
  WD 3:  Seg  8    83-121      8.42  462.52  3.6e-05       37.5%     56.63
  WD 4:  Seg 12   125-163      8.80  478.16  2.2e-05       40.0%     56.51
  WD 5:  Seg 17   194-232      7.37  419.15  0.00014       32.5%     55.58
  WD 6:  Seg 21   233-276      8.49  465.32  3.3e-05       45.0%     52.90
  WD 7:  Seg 25   280-317      3.15  244.81  0.03083       17.5%     57.20
  WD 8:  Seg 43   479-518      3.20  247.01  0.02882       20.0%     40.60

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-37     ---M----LTKFETKSNRVKGLSFHPKRPWILASLHSGVIQLWD
   WD 2   41-79     -GTL----IDRFDEHEGPVRGVHFHNSQPLFVSGGDDYKIKVWN
   WD 3   83-121    -HRC----LFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWN
   WD 4  125-163    -RTC----VSVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWD
   WD 5  194-232    -AIV----KYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR
   WD 6  233-276    MNETKAWEVDTLRGHMNNVSSVMFHAKQDIIVSNSEDKSIRVWD
   WD 7  280-317    -RTG----LQTFRREHDRFWILAVHPEMNLLAAGH-DSGMIVFK
   WD 8  479-518    LQQR----LVLGELQTPFVRYVVWSSDMESVALLSKHTIIIASK

   WD40 Template    TGEC----LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD