Input parameters:

  Query = AT1G64350.1 (Len=326)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G64350.1, Len=326):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAKSMATLDSGTTCSSWNQSGDRLAAGSLNGKLSIYESSTSSSSTFSCTSKVRVSESSIVKIVWLPSEYGDAVACVCEDG 80  
WD40-rpts        (_______________WD 1______________)(______________________WD 2________________

Query       81 SLSIWEELSEDAHGLEWKLCKSMKNKSSQVLDVQFGVSRKSLKMVAAYSDGYLRVFELLNPLELKNWQLQAEFQNVIDSL 160 
WD40-rpts      _____)          (__________________WD 3_________________)                     (_

Query      161 STLGKPSSLSASVSWNPMKGEEQEPSFVLAFNSDSPHLNSSKIWEFDEAHNRWLAVAELALPEDKGDPVYALSWAPNIGR 240 
WD40-rpts      ____________________WD 4____________________)  (______________________WD 5______

Query      241 PYEVVAVATHKGIGIWHVGLAPDLEGRLPVKKVSSLSGHQGEVWQMEWDMSGMTLASTGSDGMVKLWQSNLNGEWHEQAT 320 
WD40-rpts      ________________)(_______________________WD 6______________________)            

Query      321 LEPVPS 326 
WD40-rpts            

6 WD40-repeats found in QUERY=AT1G64350.1 (Len=326):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     3-37       8.07  447.93  5.7e-05       25.0%     48.95
  WD 2:  Seg  4    38-86       7.19  411.77  0.00018       20.0%     54.52
  WD 3:  Seg  8    97-137      6.76  393.82  0.00031       20.0%     56.46
  WD 4:  Seg 13   159-205      3.26  249.25  0.02691       25.0%     21.77
  WD 5:  Seg 16   208-257      6.26  373.43  0.00058       17.5%     49.17
  WD 6:  Seg 20   258-308      8.45  463.76  3.5e-05       32.5%     59.12

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    3-37     ----------------KSMATLDSGTTCSSWNQS---GDR----------LAAGSLNGKLSIYE
   WD 2   38-86     SS----TSSSSTFSCTSKVRVSESSIVKIVWLPS-EYGDA----------VACVCEDGSLSIWE
   WD 3   97-137    -W-----------KLCKSMKNKSSQVLDVQFGVS-RKSLK----------MVAAYSDGYLRVFE
   WD 4  159-205    --------------SLSTLGKPSSLSASVSWNPM---KGEEQEPSFVLAFNSDSPHLNSSKIWE
   WD 5  208-257    EA----HNRWLAVAELALPEDKGDPVYALSWAPNIGRPYE----------VVAVATHKGIGIWH
   WD 6  258-308    VGLAPDLEGRLPVKKVSSLSGHQGEVWQMEWDMS---GMT----------LASTGSDGMVKLWQ

   WD40 Template    TG-----------ECLRTLSGHTSGVTSVSFSPD---GKR----------LVSGSEDGTIKVWD