Input parameters:

  Query = AT1G65030.1 (Len=345)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G65030.1, Len=345):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSIIAGSYERFIWGFKLKPTKHDAESQTLTLSPLFSYPSHISPITTVACSGPAAASGGSDDTIHLYDLPSASSLGSLLDH 80  
WD40-rpts                                    (________________WD 1_______________)   (_________

Query       81 NHAASITALSFYTPSSLSFPRNLISAAADGSVAIFDTDPFVLLKSFRPHKKAVNDLAIHPSGKLALAVYRDEFFAMLNLV 160 
WD40-rpts      ___________WD 2____________________)   (_________________WD 3________________)(_

Query      161 RGKRSFCCRLGHEASLVKFDPSGERFYMVVSNKVGVHQSEDAKLLLELENPSRKRILCATPGESGTLFTGGEDRAITAWD 240 
WD40-rpts      ________________WD 4_________________)   (_________________WD 5________________)

Query      241 TNSGKLAYSIEDAHPARIKGIVVLTRNDSDGSLEDPYLIGSASSDGIIRVWDVRMAAKENTKPLAETNTKSRLTCLAGSA 320 
WD40-rpts           (_____________________WD 6____________________)(_______________WD 7________

Query      321 LKSMRRPQIGKQEPQKVDEEHEDSE 345 
WD40-rpts      _______)                 

7 WD40-repeats found in QUERY=AT1G65030.1 (Len=345):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    31-67       6.58  386.48  0.00038       32.5%     52.54
  WD 2:  Seg  7    71-116      7.10  407.81  0.00020       27.5%     53.86
  WD 3:  Seg 11   120-158      9.03  487.64  1.7e-05       17.5%     55.18
  WD 4:  Seg 15   159-198      4.51  301.08  0.00544       17.5%     49.82
  WD 5:  Seg 19   202-240      9.01  486.89  1.7e-05       22.5%     57.17
  WD 6:  Seg 23   246-292      6.61  387.67  0.00037       25.0%     47.73
  WD 7:  Seg 26   293-328      3.66  265.94  0.01612        7.5%     17.69

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   31-67     -LSPLFSY--PSHIS-PITTVAC---------S--G-----PAAASGGSDDTIHLYD
   WD 2   71-116    -ASSLGSLLDHNHAA-SITALSF---------YTPSSLSFPRNLISAAADGSVAIFD
   WD 3  120-158    -FVLLKSF--RPHKK-AVNDLAI---------HPSG-----KLALAVYRDEFFAMLN
   WD 4  159-198    LVRGKRSF--CCRLGHEASLVKF---------DPSG-----ERFYMVVSN-KVGVHQ
   WD 5  202-240    -AKLLLEL--ENPSR-KRILCAT---------PGES-----GTLFTGGEDRAITAWD
   WD 6  246-292    LAYSI--E--DAHPA-RIKGIVVLTRNDSDGSLEDP-----YLIGSASSDGIIRVWD
   WD 7  293-328    ----VRMA--AKENT-KPLAETN---------TKSR-----LTCLAGSALKSMRRPQ

   WD40 Template    TGECLRTL--SGHTS-GVTSVSF---------SPDG-----KRLVSGSEDGTIKVWD