Input parameters:

  Query = AT1G65580.1 (Len=1101)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G65580.1, Len=1101):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEDRQNDQNDDVFSFFSPSFSAATPSTLFNRSAYSSSSSSGDDESQPSVDDSNKRIDYMIQFLDRRLSEDGNHDGIGDGN 80  
WD40-rpts                                                                     (________________

Query       81 GSDSLPEFVGKCGESGIFKVPIRSAVHPNRPPSLDVRPHPLRETQIGRFLRTMTSTERQLWTGGEDGALRVWEFSELYGS 160 
WD40-rpts      _WD 1________________)            (_________________WD 2________________)       

Query      161 GRGLEVEDTAPYKESLGNEFGSAAVVCMIGDEGSRVVWSGHRDGRIRCWRLRGDHGIEEALSWQAHRGPVLSIAISAYGD 240 
WD40-rpts               (__________________WD 3_________________)(___________________WD 4______

Query      241 IWSGSEGGALKVWPWDGALGKSLSLKMEERHMAALAVERSYIDPRNMVSANGFANTLTSDVTFLVSDHTRARVWSASPLT 320 
WD40-rpts      _____________)                          (____________________WD 5_______________

Query      321 FAIWDARTRDLIKVFNIDGQLENRPENSVYPDFGSEEEGKMKVTASKKEKAQSSLGFFQRSRNAIMGAADAVRRAATKGG 400 
WD40-rpts      ____)                                                             (_____________

Query      401 FCDDSRKTEAIVISVDGMIWTGSSNGILMRWDGNGNCLQEFAYESSGILCMFTFCSRLWVGYSNGTVQVWDLEGKLLGGW 480 
WD40-rpts      _______WD 6____________________)  (________________WD 7_______________)  (______

Query      481 VAHSGPVIKMAIGAGYLFTLANHGGIRGWNVTSPGPLDNVLRAELAGKEFLYSRIENLKILAGTWNVGEGRASTDSLVSW 560 
WD40-rpts      __________WD 8_______________)                                                  

Query      561 LGCAATGVEIVVVGLQEVEMGAGVLAMSAAKETVGLEGSPLGQWWLDMIGKTLDEGSSFVRVGSRQLAGLLICVWVRHDL 640 
WD40-rpts                                                                                      

Query      641 KPHVGDVDAAAVPCGFGRAIGNKGAVGVRLRMYDRVLCFVNCHFAAHLEAVNRRNADFDHVYRTMTFSRQSSSLNAGVAG 720 
WD40-rpts                                                                                      

Query      721 ASFGVTMPRGGNALGVNTIEARPELSEADMVIFLGDFNYRLDDITYDETRDFISQRCFDWLREKDQLHTEMEAGNVFQGM 800 
WD40-rpts                                                                                      

Query      801 REAIIRFPPTYKFERHQAGLAGYDSGEKKRIPAWCDRILYRDNKKHLGAECSLDCPVVSSISQYDACMEVTDSDHKPVRC 880 
WD40-rpts                                                                                      

Query      881 VFSVKIARVDESVRRQEYGNIINSNKKIKVLLGELSKVPETIVSTNNIILQNQDSTILRITNKSEKNIAFFKIICEGQSK 960 
WD40-rpts                                                                                      

Query      961 IEEDGQAHDHRARGSFGFPQWLEVSPGTGTIKPNQIAEVSVHLEDFPTVEEFVDGVAQNSWCEDTRDKEVILVLVVHGRF 1040
WD40-rpts                                                                                      

Query     1041 STETRKHRIRVRHCPRGGPAKNHFNDGTKTSGQINALHRSDYHQLSNTLDVVEQLKNLHSP 1101
WD40-rpts                                                                   

8 WD40-repeats found in QUERY=AT1G65580.1 (Len=1101):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    64-102      4.73  310.14  0.00411       15.0%     -8.46
  WD 2:  Seg  3   115-153      6.41  379.39  0.00048       22.5%     24.65
  WD 3:  Seg  7   170-210      5.53  343.14  0.00148       22.5%     41.34
  WD 4:  Seg 10   211-254      6.97  402.64  0.00023       35.0%     44.59
  WD 5:  Seg 15   281-325      3.52  260.02  0.01934       15.0%     41.15
  WD 6:  Seg 22   387-432      5.13  326.57  0.00247       22.5%     36.91
  WD 7:  Seg 26   435-471      5.67  348.82  0.00124       32.5%     46.50
  WD 8:  Seg 30   474-510      4.17  286.92  0.00843       20.0%     32.83

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   64-102    -D-----RR--------LSEDGN-------HDGIGDGNGSDSL--PEFVGKCGESGIFKVPI
   WD 2  115-153    -D-----VR--------PHPLRE-------TQIGRFLRTMTST--ERQLWTGGEDGALRVWE
   WD 3  170-210    -A-----PY--------KESLGN-------EFGSAAVVCMIGDEGSRVVWSGHRDGRIRCWR
   WD 4  211-254    LRGDHGIEE--------ALSWQA-------HRGPVLSIAISAY--GD-IWSGSEGGALKVWP
   WD 5  281-325    YI-----DP--------RNMVSANGFANTLTSDVTFLVSDHTR--ARVWSAS--PLTFAIWD
   WD 6  387-432    -G-----AADAVRRAATKGGFCD-------DSRKTEAIVISVD--GM-IWTGSSNGILMRWD
   WD 7  435-471    -G-----NC--------LQEFAY-------ESSGILC--MFTF--CSRLWVGYSNGTVQVWD
   WD 8  474-510    -G-----KL--------LGGWVA-------HSGPVIKMAI--G--AGYLFTLANHGGIRGWN

   WD40 Template    TG-----EC--------LRTLSG-------HTSGVTSVSFSPD--GKRLVSGSEDGTIKVWD