Input parameters:

  Query = AT1G69400.1 (Len=314)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G69400.1, Len=314):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSGDRLEFENPIEDAVSRLRFSPQSNNLLVASWDSYLRLYDVESSSLSLELNSQAALLDCCFENESTSFTSGSDGFIRRY 80  
WD40-rpts       (_________________WD 1_________________)   (________________WD 2_______________

Query       81 DLNAGTVDTIGRHDDISTSIVYSYEKGEVISTGFDEKIKFWDTRQRESLVFSTDAGGAVGCVTVSGNNLVVCVDASMHIY 160 
WD40-rpts      )  (_________________WD 3________________)   (_________________WD 4_____________

Query      161 DLRNLDEAFQSYASQVEVPIRCITSVPYSRGYAVGSVDGRVAVDFPNTSCSSEIKYSFRCHPKSRNGRLDGVCINAIEFS 240 
WD40-rpts      ___)(__________________WD 5_________________)              (__________________WD

Query      241 PCGSGTFVTGDNEGYVISWNAKSRRRLNELPRYSNSIASLAFDHTGELLAIASSHTYQDAKEKEEAPQVFIHRL 314 
WD40-rpts       6_________________)   (_________________WD 7________________)            

7 WD40-repeats found in QUERY=AT1G69400.1 (Len=314):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     2-41       9.58  510.35  8.2e-06       25.0%     55.83
  WD 2:  Seg  5    45-81       5.54  343.43  0.00146       22.5%     54.80
  WD 3:  Seg  9    84-122      8.86  480.65  2.1e-05       27.5%     52.24
  WD 4:  Seg 13   126-164      7.18  411.19  0.00018       12.5%     36.19
  WD 5:  Seg 17   165-205      7.58  427.66  0.00011       20.0%     52.00
  WD 6:  Seg 22   220-260      7.30  416.06  0.00015       22.5%     35.12
  WD 7:  Seg 25   264-302      7.49  423.87  0.00012       17.5%     45.53

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    2-41     SGDRLE-FENPIEDAVSRLRFSPQSN-NLLVASWDSYLRLYD
   WD 2   45-81     -SSLSL-ELNSQ-AALLDCCFENEST-SFTSGS-DGFIRRYD
   WD 3   84-122    -AGTVD-TIGRHDDISTSIVYSYEKG-EVISTGFDEKIKFWD
   WD 4  126-164    -RESLV-FSTDAGGAVGCVTVSGNNL-VVCVDASMHIYDLRN
   WD 5  165-205    LDEAFQSYASQVEVPIRCITSVPYSR-GYAVGSVDGRVAVDF
   WD 6  220-260    CHPKSR-NGRLDGVCINAIEFSPCGSGTFVTGDNEGYVISWN
   WD 7  264-302    -RRRLN-ELPRYSNSIASLAFDHTGE-LLAIASSHTYQDAKE

   WD40 Template    TGECLR-TLSGHTSGVTSVSFSPDGK-RLVSGSEDGTIKVWD