Input parameters:

  Query = AT1G69400.2 (Len=272)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G69400.2, Len=272):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSGDRLEFENPIEDAVSRLRFSPQSNNLLVASWDSYLRLYDVESSSLSLELNSQAALLDCCFENESTSFTSGSDGFIRRY 80  
WD40-rpts       (_________________WD 1_________________)   (________________WD 2_______________

Query       81 DLNAGTVDTIGRHDDISTSIVYSYEKGEVISTGFDEKIKFWDTRQRESLVFSTDAGGAVGCVTVSGNNLVVCVDASMHIY 160 
WD40-rpts      )  (_________________WD 3________________)   (_______________WD 4_______________

Query      161 DLRNLDEAFQSYASQVEVPIRCITSVPYSRGYAVGSVDGRVAVDFPNTSCSSEIKYSFRCHPKSRNGRLDGVCINAIEFS 240 
WD40-rpts      )(___________________WD 5___________________)      (_____________________WD 6___

Query      241 PWYMSLIHHLMVHMIDHQTNSFLVATVGQGLL 272 
WD40-rpts      __________________)             

6 WD40-repeats found in QUERY=AT1G69400.2 (Len=272):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     2-41       9.71  515.96  6.9e-06       25.0%     56.67
  WD 2:  Seg  5    45-81       5.68  349.49  0.00121       22.5%     53.79
  WD 3:  Seg  9    84-122      8.89  482.01  2.0e-05       27.5%     54.35
  WD 4:  Seg 13   126-161      5.75  352.30  0.00111       17.5%     48.28
  WD 5:  Seg 17   162-205      6.61  387.66  0.00037       17.5%     51.89
  WD 6:  Seg 21   212-259      4.13  285.37  0.00885       17.5%     34.38

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    2-41     SGD----RLEFENPIEDA---------VSRLRFSPQSNNLLVASWDSYLRLYD
   WD 2   45-81     -SS----LSLELNSQAA----------LLDCCFENESTSFTSGS-DGFIRRYD
   WD 3   84-122    -AG----TVDTIGRHDDI---------STSIVYSYEKGEVISTGFDEKIKFWD
   WD 4  126-161    -RE----SLVFSTDAGGA---------VGCVTVSGNNLVVCV---DASMHIYD
   WD 5  162-205    LRNLDEAFQSYASQVEVP---------IRCITSVPYSRGYAVGSVDGRVAVDF
   WD 6  212-259    -SE----IKYSFRCHPKSRNGRLDGVCINAIEFSPWYMSLIHHLMVHMIDHQT

   WD40 Template    TGE----CLRTLSGHTSG---------VTSVSFSPDGKRLVSGSEDGTIKVWD