Input parameters:

  Query = AT1G73180.1 (Len=513)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G73180.1, Len=513):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSSPSLEILVREAEGFTVWNGPPFTNGQPTLKLERVSCSNTKFSVDGSKLMAMKSDGVISIYDATSLTEVRSFTIANVT 80  
WD40-rpts                          (___________________WD 1___________________)(_______________

Query       81 AAELSPCGTYLQTFQKPTTPQEKNVSIWNTETGDLAHSHYQKSITKASWPSIRFCPDESSACRLATNEVQFFDPKDFSKG 160 
WD40-rpts      _____WD 2___________________)                                               (___

Query      161 ITSRIRVPGIAAFELSKTPASHVAVFVPESKGSPGSVQIFGCGEELQSQPSARRSFFRCSSVQFSWNHGSTGLLVVVQSD 240 
WD40-rpts      _________________WD 3___________________)                                       

Query      241 VDKTNQSYYGETKLHYLTIDGTHEGLVPLRKEGPVHDVQWSFSGSEFAVVYGFMPACVTIFDKNCKPLMELGEGPYNTLR 320 
WD40-rpts                           (__________________WD 4_________________)(_________________

Query      321 WNPKGRVLCVAGFGNLPGDMAFWDVVNKKQLGSNKAEWSVTSEWSPDGRYFLTASTAPRRQIDNGMKIFNYDGKRYYKKM 400 
WD40-rpts      _WD 5__________________)(_________________WD 6_________________)                

Query      401 FERLYQAEWKPESPERFGDISELIKSVESLKLGEGKSQGQGSAQKKTIAPNPIAQKPAAYRPPHAKHAAAVQAELLGIST 480 
WD40-rpts                                                                                      

Query      481 TGEMSKNALKNKKKRENKKAAAAAAAASGSNNA 513 
WD40-rpts                                       

6 WD40-repeats found in QUERY=AT1G73180.1 (Len=513):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    21-64       6.66  389.80  0.00035       30.0%     45.35
  WD 2:  Seg  6    65-109      5.45  339.80  0.00164       20.0%     39.62
  WD 3:  Seg 14   157-201      3.46  257.48  0.02091       15.0%     32.26
  WD 4:  Seg 21   262-302      4.12  284.89  0.00898       17.5%     50.76
  WD 5:  Seg 25   303-344      3.99  279.63  0.01057       20.0%     42.08
  WD 6:  Seg 29   345-384      4.32  293.06  0.00698       15.0%     46.63

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   21-64     NGPPFTNGQPTLKLERVSCSNTKFSVDGSKL--M------A---MKSDGVISIYD
   WD 2   65-109    AT----SLTEVRSFTIANVTAAELSPCGTYL--Q-TFQKPT---TPQEKNVSIWN
   WD 3  157-201    -F----SKGITSRIRVPGIAAFELSKTPASH--VAVFVPES---KGSPGSVQIFG
   WD 4  262-302    -T----HEGLVPLRKEGPVHDVQWSFSGSEFAVV------Y---GFMPACVTIFD
   WD 5  303-344    -K----NCKPLMELGEGPYNTLRWNPKGRVL--C------VAGFGNLPGDMAFWD
   WD 6  345-384    VV----NKKQLGSNKAEWSVTSEWSPDGRYF--L------T---ASTAPRRQIDN

   WD40 Template    TG----ECLRTLSGHTSGVTSVSFSPDGKRL--V------S---GSEDGTIKVWD