Input parameters:

  Query = AT1G73180.2 (Len=484)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G73180.2, Len=484):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSSPSLEILVREAEGFTVWNGPPFTNGQPTLKLERVSCSNTKFSVDGSKLMAMKSDGVISIYDATSLTEVRSFTIANVT 80  
WD40-rpts                               (_________________WD 1________________)(_______________

Query       81 AAELSPCGTYLQTFQKPTTPQEKNVSIWNTETGDLAHSHYQKSITKASWPSIRFCPDESSACRLATNEVQFFDPKDFSKG 160 
WD40-rpts      _____WD 2___________________)   (__________________WD 3_________________)   (___

Query      161 ITSRIRVPGIAAFELSKTPASHVAVFVPESKGSPGSVQIFGCGEELQSQPSARRSFFRCSSVQFSWNHGSTGLLVVVQSD 240 
WD40-rpts      _________________WD 4___________________)                                       

Query      241 VDKTNQSYYGETKLHYLTIDGTHEGLVPLRKEGPVHDVQWSFSGSEFAVVYGFMPACVTIFDKNCKPLMELGEGPYNTLR 320 
WD40-rpts                           (__________________WD 5_________________)(_________________

Query      321 WNPKGRVLCVAGFGNLPGDMAFWDVVNKKQLGSNKAEWSVTSEWSPDGRYFLTASTAPRRQIDNGMKIFNYDGKRYYKKM 400 
WD40-rpts      _WD 6__________________)(____________________WD 7____________________)          

Query      401 FERLYQAEWKPESPERFGDISELIKSVESLKLGEGKSQGQGSAQKKTIAPNPIAQKPAAYRPPHAKHAAAVQAEVTQQLF 480 
WD40-rpts                                                                                      

Query      481 NNHP 484 
WD40-rpts          

7 WD40-repeats found in QUERY=AT1G73180.2 (Len=484):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    26-64       6.90  399.88  0.00025       27.5%     45.77
  WD 2:  Seg  6    65-109      5.64  347.70  0.00128       20.0%     41.24
  WD 3:  Seg 10   113-153      2.99  238.00  0.03794       15.0%     38.31
  WD 4:  Seg 14   157-201      3.82  272.43  0.01319       15.0%     31.47
  WD 5:  Seg 21   262-302      4.23  289.31  0.00783       17.5%     47.98
  WD 6:  Seg 25   303-344      4.45  298.49  0.00590       20.0%     39.98
  WD 7:  Seg 29   345-390      5.15  327.44  0.00240       20.0%     54.48

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   26-64     -TNGQPTLKLER---VSCSNTKFSVDGSK--LM------AMKS------DGVISIYD
   WD 2   65-109    ATSLTEVRSFTI---ANVTAAELSPCGTY--LQ-TFQKPTTPQ------EKNVSIWN
   WD 3  113-153    -GDLAHSHYQKSITKASWPSIRFCPDESS--AC------RLAT------N-EVQFFD
   WD 4  157-201    -FSKGITSRIRV---PGIAAFELSKTPAS--HVAVFVPESKGS------PGSVQIFG
   WD 5  262-302    -THEGLVPLRKE---GPVHDVQWSFSGSEFAVV------YGFM------PACVTIFD
   WD 6  303-344    -KNCKPLMELGE---GPYNTLRWNPKGRV--LC---VAGFGNL------PGDMAFWD
   WD 7  345-390    VVNKKQLGSNKA---EWSVTSEWSPDGRY--FL------TASTAPRRQIDNGMKIFN

   WD40 Template    TGECLRTLSGHT---SGVTSVSFSPDGKR--LV------SGSE------DGTIKVWD