Input parameters:

  Query = AT1G73720.1 (Len=511)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G73720.1, Len=511):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MALEIEARDVIKIMLQFCKENSLNQTFQTLQSECQVSLNTVDSVETFISDINSGRWDSVLPQVSQLKLPRNKLEDLYEQI 80  
WD40-rpts                                                                                      

Query       81 VLEMIELRELDTARAILRQTQVMGVMKQEQAERYLRMEHLLVRSYFDPHEAYGDSTKERKRAQIAQAVAAEVTVVPPSRL 160 
WD40-rpts                                                                         (____________

Query      161 MALIGQALKWQQHQGLLPPGTQFDLFRGTAAMKQDVEDTHPNVLTHTIKFGKKSHAECARFSPDGQFLASSSVDGFIEVW 240 
WD40-rpts      ___________WD 1______________________)(___________________WD 2__________________

Query      241 DYISGKLKKDLQYQADESFMMHDDPVLCIDFSRDSEMLASGSQDGKIKIWRIRTGVCIRRFDAHSQGVTSLSFSRDGSQL 320 
WD40-rpts      )           (_________________WD 3________________)   (_________________WD 4____

Query      321 LSTSFDQTARIHGLKSGKLLKEFRGHTSYVNHAIFTSDGSRIITASSDCTVKVWDSKTTDCLQTFKPPPPLRGTDASVNS 400 
WD40-rpts      ____________)   (_________________WD 5________________)         (_______________

Query      401 IHLFPKNTEHIVVCNKTSSIYIMTLQGQVVKSFSSGNREGGDFVAACVSTKGDWIYCIGEDKKLYCFNYQSGGLEHFMMV 480 
WD40-rpts      __WD 6_________________)   (__________________WD 7_________________)   (________

Query      481 HEKDVIGITHHPHRNLLATYSEDCTMKLWKP 511 
WD40-rpts      _________WD 8________________) 

8 WD40-repeats found in QUERY=AT1G73720.1 (Len=511):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   148-198      5.93  359.63  0.00089       15.0%     47.16
  WD 2:  Seg  7   199-241      8.83  479.44  2.1e-05       45.0%     52.67
  WD 3:  Seg 12   253-291      9.36  501.23  1.1e-05       35.0%     46.53
  WD 4:  Seg 15   295-333     10.34  541.98  3.1e-06       45.0%     54.61
  WD 5:  Seg 19   337-375     10.61  553.12  2.2e-06       45.0%     56.23
  WD 6:  Seg 24   385-424      6.52  383.92  0.00042       17.5%     37.42
  WD 7:  Seg 27   428-468      6.07  365.32  0.00074       17.5%     56.30
  WD 8:  Seg 31   472-510      8.79  477.91  2.3e-05       27.5%     50.69

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  148-198    VAAEVTV---VPPSRLMALIGQALKW--QQHQGLLP-PGTQFDLFRGTAAMKQDVED
   WD 2  199-241    THPNVLTHTIKFG---------KKSH--AECARFSP-DGQF--LASSSVDGFIEVWD
   WD 3  253-291    -YQADES---FMM---------HDDP--VLCIDFSR-DSEM--LASGSQDGKIKIWR
   WD 4  295-333    -GVCIRR---FDA---------HSQG--VTSLSFSR-DGSQ--LLSTSFDQTARIHG
   WD 5  337-375    -GKLLKE---FRG---------HTSY--VNHAIFTS-DGSR--IITASSDCTVKVWD
   WD 6  385-424    -FKPPPP---LRG---------TDAS--VNSIHLFPKNTEH--IVVCNKTSSIYIMT
   WD 7  428-468    -QVVKSF---SSG---------NREGGDFVAACVST-KGDW--IYCIGEDKKLYCFN
   WD 8  472-510    -GGLEHF---MMV---------HEKD--VIGITHHP-HRNL--LATYSEDCTMKLWK

   WD40 Template    TGECLRT---LSG---------HTSG--VTSVSFSP-DGKR--LVSGSEDGTIKVWD