Input parameters:

  Query = AT1G76260.1 (Len=350)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G76260.1, Len=350):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQGGSSGIGYGLKYQARCISDVKADRDHTSFLTGTLSLKEENEVHLLRLSSGGSELLCEGLFSHPNEIWDLASSPFDQRI 80  
WD40-rpts              (_________________WD 1_________________)(______________________WD 2_____

Query       81 FSTVFSTGDSYGAAIWQIPEPYGQSNSSTLECVASLDAHVGKINCVLWCPSGNSDKLISMDEQNLVFWSLDSSKKSAEVL 160 
WD40-rpts      ________________)            (_________________WD 3_________________)           

Query      161 SKESAGMRHSLSGGAWNPHDVNSVAATSESSIQFWDLRTMKKNNSIERAHVRNVDYNLKREHILVSADDESGIHLWDLRK 240 
WD40-rpts      (_______________WD 4_______________)(__________________WD 5_________________)   

Query      241 TKFPVQELPGHTHWTWAVRCNPEYEELILSVGTDSAVNLWFASASSEHKTSESPVEASRQRVNPLLNSYTDYEDSVYGLA 320 
WD40-rpts       (_________________WD 6_________________)                     (_________________

Query      321 WSSREPWIFASLSYDGRVVIESVKPFLPRR 350 
WD40-rpts      WD 7_________________)        

7 WD40-repeats found in QUERY=AT1G76260.1 (Len=350):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     9-48       6.16  369.00  0.00066       12.5%     47.28
  WD 2:  Seg  4    49-97       6.24  372.58  0.00059       17.5%     45.90
  WD 3:  Seg  8   110-149      7.22  412.85  0.00017       20.0%     54.15
  WD 4:  Seg 13   161-196      8.13  450.61  5.3e-05       15.0%     45.93
  WD 5:  Seg 16   197-237      7.67  431.35  9.6e-05       22.5%     43.61
  WD 6:  Seg 19   242-281      7.68  431.74  9.4e-05       25.0%     52.21
  WD 7:  Seg 23   303-342      5.97  361.27  0.00084       17.5%     53.13

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    9-48     ---------GYGLKYQARCISDVKADR-DHT-S-F-LT----GTLSLKEENEVHLLR
   WD 2   49-97     LSSGGSELLCEGLFSHPNEIWDLASSP-FDQ-R-I-FSTVFSTG----DSYGAAIWQ
   WD 3  110-149    -LE-----CVASLDAHVGKINCVLWCP-SGNSD-K-LI----SM----DEQNLVFWS
   WD 4  161-196    ---------SKESAGMRHSLSGGAWNP-HDV-N-S-VA----AT----SESSIQFWD
   WD 5  197-237    LRT-----MKKNNSIERAHVRNVDYNL-KRE-HIL-VS----AD----DESGIHLWD
   WD 6  242-281    -KF-----PVQELPGHTHWTWAVRCNP-EYE-E-LILS----VG----TDSAVNLWF
   WD 7  303-342    -NP-----LLNSYTDYEDSVYGLAWSSREPW-I-F-AS----LS----YDGRVVIES

   WD40 Template    TGE-----CLRTLSGHTSGVTSVSFSP-DGK-R-L-VS----GS----EDGTIKVWD