Input parameters:

  Query = AT1G78070.1 (Len=449)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G78070.1, Len=449):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDIFDNSDLEYLVDEFHADFDDDEPFGEVDVTSESDSDFMDSDFDFELSESKTNNETSALEARNGKDIQGIPWESLNYTR 80  
WD40-rpts                                                                                      

Query       81 DRYRENRLLHYKNFESLFRSREELDKECLQVEKGKNFYDFQFNTRLVKSTIAHFQLRNLVWATSKHDVYFMNNYSLMHWS 160 
WD40-rpts                                       (_________________WD 1________________)        

Query      161 SLLQRGKEVLNVAKPIVPSMKQHGSLSQSVSRVQISTMAVKDDLIVAGGFQGELICKKINEPEVAFCTKLTSADNDITNS 240 
WD40-rpts                         (_________________WD 2________________)      (_______________

Query      241 VDIYNAPSGSLRVMTANNDCTVRLFDATNFALLNRFAFHWSVNNISTSPDGKLVAVLGDSPECLLADTGSGKVIHGLEGH 320 
WD40-rpts      ___WD 3__________________)   (________________WD 4________________)   (_________

Query      321 LDYSFSSAWHPNGQILATGNQDTTCRLWDVRNLSQSLKVLKGNMGAIRALRFTSDGRFLAMAEPADFVHLFDTEAGYSQC 400 
WD40-rpts      ________WD 5________________)    (_________________WD 6________________)   (____

Query      401 QEIDLFGEIAGISFSPDTEALFVGVADRTYGSLLEFNRKRNHSYVDSIF 449 
WD40-rpts      _____________WD 7_________________)              

7 WD40-repeats found in QUERY=AT1G78070.1 (Len=449):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   114-152      7.11  408.47  0.00019       15.0%     51.08
  WD 2:  Seg  7   180-218      6.32  375.58  0.00054       17.5%     51.64
  WD 3:  Seg 11   225-266      6.13  367.86  0.00069       25.0%     53.71
  WD 4:  Seg 15   270-307      7.28  415.46  0.00016       27.5%     55.25
  WD 5:  Seg 19   311-349     10.14  533.69  4.0e-06       32.5%     52.29
  WD 6:  Seg 23   354-392      8.75  476.01  2.4e-05       20.0%     54.64
  WD 7:  Seg 27   396-435      7.25  414.13  0.00016       25.0%     55.34

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  114-152    GKNFYDFQFNTRLVKSTI--AHFQLR-NLVWATSKHDV-YFMN
   WD 2  180-218    MKQHGSLSQSVSRVQIST--MAVKDD-LIVAGGFQGEL-ICKK
   WD 3  225-266    AFCTKLTSADNDITNSVDIYNAPSGSLRVMTANNDCTV-RLFD
   WD 4  270-307    FALLNRFAFHWS-VNNIS--TSPDGK-LVAVLGDSPEC-LLAD
   WD 5  311-349    GKVIHGLEGHLDYSFSSA--WHPNGQ-ILATGNQDTTC-RLWD
   WD 6  354-392    SQSLKVLKGNMGAIRALR--FTSDGR-FLAMAEPADFV-HLFD
   WD 7  396-435    GYSQCQEIDLFGEIAGIS--FSPDTE-ALFVGVADRTYGSLLE

   WD40 Template    GECLRTLSGHTSGVTSVS--FSPDGK-RLVSGSEDGTI-KVWD