Input parameters:

  Query = AT1G79990.1 (Len=1135)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G79990.1, Len=1135):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFYGTAVWDPWLIVGQIICLQCSYYLTLGLFTMVFLGLRVPRLSLVYFFDYATLTTSTFTGWSVIASFLFSSLAGAVYMI 80  
WD40-rpts                                                                                      

Query       81 FLVERARKCLDFSATLYIIHLFFCIMYGGWPSSMAWWVVNGTGLAVMALLAEYLCIKREQREIPMDRFHSNPDSDPNRQR 160 
WD40-rpts                                              (_________________________WD 1__________

Query      161 ALEVGSPPLRFFFFVISDPPCDQGPFPSIIRSPVQTFVWTCKDVYVRVFLIALKFDPLRLEIKRKFAQRSERVKSVDLHP 240 
WD40-rpts      ______________) (______________WD 2______________)         (_________________WD 

Query      241 TEPWILASLYSGTLCIWNYQTQTMVKSFDVTELPVRSAKFIARKQWVVAGADDMFIRVYNYNTMDKIKVFEAHADYIRCV 320 
WD40-rpts      3________________)   (_________________WD 4________________)   (________________

Query      321 AVHPTLPYVLSSSDDMLIKLWDWEKGWLCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHL 400 
WD40-rpts      _WD 5________________)(___________________WD 6___________________)(_____________

Query      401 KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVSFHPELPIIITGSEDGTVRIWHATTYRLEN 480 
WD40-rpts      ______WD 7___________________)   (_________________WD 8________________)   (____

Query      481 TLNYGLERVWAIGHIKGSRRVVIGYDEGSIMVKLGREIPVASMDNSGKIIWAKHNEIHTVNIKSVGADEVTDGERLPLAV 560 
WD40-rpts      _____________WD 9________________)         (_________________WD10_______________

Query      561 KELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSSDGEHAVRESSTKIKIFSKNFQEKKTVR 640 
WD40-rpts      _)                           (__________________WD11_________________)          

Query      641 PTFSAEHIFGGTLLTMCSSDFICFYDWAECRLIRRIDVTVKNLYWADSGDLVAIASDTSFYILKFNRDIVSSYFDGGKQI 720 
WD40-rpts                                                                       (______________

Query      721 DEEGIEDAFELLNETNERVRTGLWVGDCFIYTNSSWRLNYCVGGEVTTMYHLDRPMYLLGYLANQSRVYLIDKEFNVIGY 800 
WD40-rpts      ___WD12_________________)                                                       

Query      801 TLLLSLIEYKTLVMRGDLEQANEVLPSIPKEHHNSVAHFLESRGMTEDALEVATDPDYRFELAIQLGRLAVAKDIAVEAQ 880 
WD40-rpts                                                                                      

Query      881 NESKWKQLGELAMSSGKLDMAEECMRHAMDLSGLLLLYSSLGDADGMMKLAALAKEQGKNNVAFLCLFMLGQVEDCLHLL 960 
WD40-rpts                                                                                      

Query      961 VESNRIPEAALMARSYLPSKVSEIVALWRNDLTKISPKAAESLADPEEYPNLFEEWQVALSLENRAAETRGVHPPAGDYC 1040
WD40-rpts                                                                                      

Query     1041 SHADRDHTTLVDAFRIMQIEEEGRLEQGDVLDEVGEEGEDGEEEEEEDRQEESSDGRQQNVEEEAVVVDADSTDGAVLVN 1120
WD40-rpts                                                                                      

Query     1121 GNESEEQWVLTPPQE 1135
WD40-rpts                     

12 WD40-repeats found in QUERY=AT1G79990.1 (Len=1135):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   121-175      4.26  290.69  0.00751       12.5%     41.42
  WD 2:  Seg  9   177-210      4.93  318.49  0.00317       15.0%     38.45
  WD 3:  Seg 12   220-258      6.15  368.52  0.00067       22.5%     48.22
  WD 4:  Seg 15   262-300      7.06  406.25  0.00021       20.0%     56.04
  WD 5:  Seg 19   304-342      8.21  453.62  4.8e-05       25.0%     55.83
  WD 6:  Seg 23   343-386      7.85  438.96  7.5e-05       37.5%     53.32
  WD 7:  Seg 27   387-430      8.10  449.21  5.5e-05       42.5%     50.11
  WD 8:  Seg 31   434-472     10.16  534.52  3.9e-06       45.0%     54.05
  WD 9:  Seg 35   476-514      5.64  347.78  0.00128       22.5%     54.09
  WD10:  Seg 40   524-562      4.32  293.28  0.00693       12.5%     35.97
  WD11:  Seg 46   590-630      2.80  230.24  0.04804       20.0%     38.89
  WD12:  Seg 57   706-745      4.55  302.53  0.00520        7.5%     18.18

Multiple sequence alignment of 12 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  121-175    GT--GLAVMALLAEYLCIKREQREIPMDRFHSNP-DSDPNRQRA--LEVGSPPLRFFFFV
   WD 2  177-210    -----------------SDPPCDQGPFPSIIRSP-VQ-----T---FVWTCKDVYVRVFL
   WD 3  220-258    -L--E----------IKRKFAQRSERVKSVDLHP-TE-----PW--ILASLYSGTLCIWN
   WD 4  262-300    -Q--T----------MVKSFDVTELPVRSAKFIA-RK-----QW--VVAGADDMFIRVYN
   WD 5  304-342    -M--D----------KIKVFEAHADYIRCVAVHP-TL-----PY--VLSSSDDMLIKLWD
   WD 6  343-386    WE--K-------GWLCTQIFEGHSHYVMQVTFNPKDT-----NT--FASASLDRTIKIWN
   WD 7  387-430    LGSPD----------PNFTLDAHLKGVNCVDYFT-GG-----DKPYLITGSDDHTAKVWD
   WD 8  434-472    -K--S----------CVQTLEGHTHNVSAVSFHP-EL-----PI--IITGSEDGTVRIWH
   WD 9  476-514    -Y--R----------LENTLNYGLERVWAIGHIK-GS-----RR--VVIGYDEGSIMVKL
   WD10  524-562    -D--N----------SGKIIWAKHNEIHTVNIKS-VG-----AD--EVTDGERLPLAVKE
   WD11  590-630    YIIYT----------ALAWRNRSFGSALEFVWSS-DG-----EH--AVRES-STKIKIFS
   WD12  706-745    NR--D----------IVSSYFDGGKQIDEEGIED-AF-----EL--LNETNERVRTGLWV

   WD40 Template    TG--E----------CLRTLSGHTSGVTSVSFSP-DG-----KR--LVSGSEDGTIKVWD