Input parameters:
Query = AT1G79990.3 (Len=920)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (AT1G79990.3, Len=920):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MPLRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWNYQTQTMVKSFDVTELPVRSAKFIARKQWVVAGADDMF 80
WD40-rpts (_________________WD 1_________________) (_________________WD 2____________
Query 81 IRVYNYNTMDKIKVFEAHADYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWLCTQIFEGHSHYVMQVTFNPKDTNTFAS 160
WD40-rpts ____) (_________________WD 3________________)(___________________WD 4_________
Query 161 ASLDRTIKIWNLGSPDPNFTLDAHLKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVSFHPE 240
WD40-rpts __________)(___________________WD 5___________________) (_________________WD 6
Query 241 LPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGHIKGSRRVVIGYDEGSIMVKLGREIPVASMDNSGKIIWAKHN 320
WD40-rpts ________________) (_________________WD 7________________) (___________
Query 321 EIHTVNIKSVGADEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSSDG 400
WD40-rpts ______WD 8________________)
Query 401 EHAVRESSTKIKIFSKNFQEKKTVRPTFSAEHIFGGTLLTMCSSDFICFYDWAECRLIRRIDVTVKNLYWADSGDLVAIA 480
WD40-rpts (________________WD 9________
Query 481 SDTSFYILKFNRDIVSSYFDGGKQIDEEGIEDAFELLNETNERVRTGLWVGDCFIYTNSSWRLNYCVGGEVTTMYHLDRP 560
WD40-rpts ________) (_________________WD10_________________)
Query 561 MYLLGYLANQSRVYLIDKEFNVIGYTLLLSLIEYKTLVMRGDLEQANEVLPSIPKEHHNSVAHFLESRGMTEDALEVATD 640
WD40-rpts
Query 641 PDYRFELAIQLGRLAVAKDIAVEAQNESKWKQLGELAMSSGKLDMAEECMRHAMDLSGLLLLYSSLGDADGMMKLAALAK 720
WD40-rpts
Query 721 EQGKNNVAFLCLFMLGQVEDCLHLLVESNRIPEAALMARSYLPSKVSEIVALWRNDLTKISPKAAESLADPEEYPNLFEE 800
WD40-rpts
Query 801 WQVALSLENRAAETRGVHPPAGDYCSHADRDHTTLVDAFRIMQIEEEGRLEQGDVLDEVGEEGEDGEEEEEEDRQEESSD 880
WD40-rpts
Query 881 GRQQNVEEEAVVVDADSTDGAVLVNGNESEEQWVLTPPQE 920
WD40-rpts
10 WD40-repeats found in QUERY=AT1G79990.3 (Len=920):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 4-43 6.17 369.36 0.00065 22.5% 53.41
WD 2: Seg 5 47-85 6.75 393.60 0.00031 20.0% 56.65
WD 3: Seg 9 89-127 8.05 447.09 5.9e-05 25.0% 56.60
WD 4: Seg 13 128-171 7.80 436.94 8.0e-05 37.5% 54.64
WD 5: Seg 17 172-215 7.83 438.01 7.8e-05 42.5% 53.28
WD 6: Seg 21 219-257 10.09 531.33 4.3e-06 45.0% 55.73
WD 7: Seg 25 261-299 5.41 338.12 0.00173 22.5% 54.76
WD 8: Seg 30 309-347 4.18 287.27 0.00834 12.5% 43.87
WD 9: Seg 44 452-489 2.78 229.48 0.04915 15.0% 44.97
WD10: Seg 48 491-530 4.48 299.90 0.00564 7.5% 21.05
Multiple sequence alignment of 10 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 4-43 RL--E---IKRKFAQRSERVKSVDLHP--TEPWILASLYSGTLCIWN
WD 2 47-85 -Q--T---MVKSFDVTELPVRSAKFIA--RKQWVVAGADDMFIRVYN
WD 3 89-127 -M--D---KIKVFEAHADYIRCVAVHP--TLPYVLSSSDDMLIKLWD
WD 4 128-171 WE--KGWLCTQIFEGHSHYVMQVTFNP-KDTNTFASASLDRTIKIWN
WD 5 172-215 LGSPD---PNFTLDAHLKGVNCVDYFTGGDKPYLITGSDDHTAKVWD
WD 6 219-257 -K--S---CVQTLEGHTHNVSAVSFHP--ELPIIITGSEDGTVRIWH
WD 7 261-299 -Y--R---LENTLNYGLERVWAIGHIK--GSRRVVIGYDEGSIMVKL
WD 8 309-347 DN--S----GKIIWAKHNEIHTVNIKS--VGADEVTDGERLPLAVKE
WD 9 452-489 WA--E---C-RLIRRIDVTVKNLYWAD--SGDLVAIASDT-SFYILK
WD10 491-530 NR--D---IVSSYFDGGKQIDEEGIED--AFELLNETNERVRTGLWV
WD40 Template TG--E---CLRTLSGHTSGVTSVSFSP--DGKRLVSGSEDGTIKVWD