Input parameters:

  Query = AT1G80490.2 (Len=1120)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G80490.2, Len=1120):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80  
WD40-rpts                                                                                      

Query       81 YLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDK 160 
WD40-rpts                                                                                      

Query      161 LQFPTLRTSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPFQ 240 
WD40-rpts                                                                                      

Query      241 PTPSPVPTPLAGWMSSPSSVPHPAVSGGPIALGAPSIQAALKHPRTPPSNSAVDYPSGDSDHVSKRTRPMGISDEVSLGV 320 
WD40-rpts                                                                        (_____________

Query      321 NMLPMTFPGQAHGHNQTFKAPDDLPKTVARTLSQGSSPMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWD 400 
WD40-rpts      __WD 1_______________)  (_________________WD 2_________________)                

Query      401 LSKCSMPLQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQLCVT 480 
WD40-rpts      (____________________WD 3___________________)      (__________________WD 4______

Query      481 TCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYSA 560 
WD40-rpts      ___________)   (__________________WD 5_________________)   (___________________W

Query      561 DGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGG 640 
WD40-rpts      D 6__________________)   (_________________WD 7_________________)(______________

Query      641 LQASPRIRFNKEGSLLAVSANDNMIKVMANSDGLRLLHTVENLSSESSKPAINSIPMVERPASVVSIPGMNGDSRNMVDV 720 
WD40-rpts      _____WD 8___________________)                            (_________________WD 9_

Query      721 KPVITEESNDKSKVWKLTEVGEPSQCRSLRLPENMRVTKISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATAS 800 
WD40-rpts      _______________)         (_________________WD10_________________)               

Query      801 LPPQQWQPASGILMTNDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 880 
WD40-rpts                     (_______________WD11_______________)   (_________________WD12____

Query      881 IAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGWEKQKSKVLQIPQGRSTSSLS 960 
WD40-rpts      _____________)   (_________________WD13________________)        (_______________

Query      961 DTRVQFHQDQVHFLVVHETQLAIYETTKLECMKQWPVRESAAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVN 1040
WD40-rpts      ___WD14_________________)(___________________WD15___________________)          (

Query     1041 PSAYLPASLSNSNVHPLVIAAHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPENGSASAVTATPSVGASASDQPQR 1120
WD40-rpts      ___________________WD16__________________)                                      

16 WD40-repeats found in QUERY=AT1G80490.2 (Len=1120):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   307-342      3.99  279.38  0.01065       15.0%      7.74
  WD 2:  Seg  4   345-384      5.09  325.11  0.00258       22.5%     52.41
  WD 3:  Seg  9   401-445      6.52  384.15  0.00041       17.5%     48.99
  WD 4:  Seg 12   452-492      7.13  409.21  0.00019       35.0%     52.43
  WD 5:  Seg 16   496-536      7.17  410.75  0.00018       30.0%     54.47
  WD 6:  Seg 20   540-582      5.69  349.73  0.00120       22.5%     54.04
  WD 7:  Seg 24   586-625      7.24  413.81  0.00016       32.5%     57.22
  WD 8:  Seg 28   626-669      6.54  384.68  0.00041       20.0%     50.31
  WD 9:  Seg 34   698-736      3.90  275.71  0.01192       15.0%     17.92
  WD10:  Seg 38   746-785      7.84  438.41  7.7e-05        7.5%     43.24
  WD11:  Seg 42   816-851      4.51  300.85  0.00548       15.0%     40.36
  WD12:  Seg 45   855-894      6.71  392.01  0.00032       22.5%     58.40
  WD13:  Seg 49   898-936      8.76  476.64  2.3e-05       32.5%     58.08
  WD14:  Seg 53   945-985      2.77  229.04  0.04980       15.0%     39.73
  WD15:  Seg 57   986-1029     6.69  391.08  0.00033       22.5%     55.28
  WD16:  Seg 62  1040-1082     4.76  311.18  0.00398       15.0%     42.53

Multiple sequence alignment of 16 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  307-342    -TRP-----MGISDE-VSLGV---NML--PMTF-PGQ------AHGHN----QTFKAPD
   WD 2  345-384    -PKT-----VARTLS-QGSSP---MSM--DFHP-IKQTLL--LVGTNV----GDIGLWE
   WD 3  401-445    LSKCSMPLQAALVKE-PVVSV---NRV--IWSP-DGS-LF--GVAYSR----HIVQLYS
   WD 4  452-492    -MRQ-----HLEIDA-HVGGV---NDI--AFST-PNK-QLCVTTCGDD----KTIKVWD
   WD 5  496-536    -GVK-----RYTFEG-HEAPV---YSICPHYKE-NIQ-FI--FSTALD----GKIKAWL
   WD 6  540-582    -MGS-----RVDYEA-PGRWC---TTM--AYSA-DGT-RL--FSCGTSKDGESFIVEWN
   WD 7  586-625    -GAV-----KRTYQGFHKRSL---GVV--QFDT-TKN-RY--LAAGDD----FSIKFWD
   WD 8  626-669    MDTI-QLLTAIDADG-GLQAS---PRI--RFNK-EGS-LL--AVSAND----NMIKVMA
   WD 9  698-736    -VER-----PASVVS-IPGMN---GDS--RNMV-DVK-PV--ITEESN----DKSKVWK
   WD10  746-785    CRSL-----RLPENM-RVTKI---SRL--IFTN-SGN-AI--LALASN----AIHLLWK
   WD11  816-851    NDV--------AETN-PEEAV---PCF--ALSK-NDS-YV--MSAS-G----GKISLFN
   WD12  855-894    -FKT-----MATFMP-PPPAA---TFL--AFHPQDNN-II--AIGMDD----STIQIYN
   WD13  898-936    -DEV-----KSKLKG-HSKRI---TGL--AFSN-VLN-VL--VSSGAD----AQLCVWN
   WD14  945-985    -SKV-----LQIPQG-RSTSSLSDTRV--QFHQ-DQV-HF--LVVH-E----TQLAIYE
   WD15  986-1029   TTKL-ECMKQWPVRE-SAAPI---THA--TFSC-DSQ-LI--YTSFMD----ATICVFS
   WD16 1040-1082   NPSA-----YLPASL-SNSNVHPLVIA--AHPQ-ESN-MF--AVGLSD----GGVHIFE

   WD40 Template    TGEC-----LRTLSG-HTSGV---TSV--SFSP-DGK-RL--VSGSED----GTIKVWD