Input parameters:

  Query = AT1G80670.1 (Len=349)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G80670.1, Len=349):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MATFGAPATANSNPNKSYEVTPSPADSISSLSFSPRADILVATSWDNQVRCWEISRSGASLASAPKASISHDQPVLCSAW 80  
WD40-rpts                    (_________________WD 1________________)        (_________________W

Query       81 KDDGTTVFSGGCDKQAKMWPLLSGGQPVTVAMHEGPIAAMAWIPGMNLLATGSWDKTLKYWDTRQQNPVHTQQLPDKCYT 160 
WD40-rpts      D 2________________)   (_________________WD 3________________)(_________________

Query      161 LSVKHPLMVVGTADRNLIVFNLQNPQTEFKRIQSPLKYQTRCVTAFPDQQGFLVGSIEGRVGVHHLDDSQQSKNFTFKCH 240 
WD40-rpts      WD 4________________)     (_________________WD 5________________)(______________

Query      241 RDGNDIYSVNSLNFHPVHGTFATAGSDGAFNFWDKDSKQRLKAMSRCNQPIPCSSFNHDGSIYAYAACYDWSKGAENHNP 320 
WD40-rpts      ________WD 6_____________________)   (_________________WD 7_________________)   

Query      321 ATAKSSIFLHLPQESEVKAKPRVGATGRK 349 
WD40-rpts                                   

7 WD40-repeats found in QUERY=AT1G80670.1 (Len=349):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    15-53       9.21  495.27  1.3e-05       25.0%     52.46
  WD 2:  Seg  6    62-100      8.54  467.35  3.1e-05       22.5%     46.31
  WD 3:  Seg  9   104-142      9.46  505.59  9.5e-06       30.0%     53.57
  WD 4:  Seg 13   143-181      6.13  367.98  0.00068       15.0%     42.83
  WD 5:  Seg 17   187-225      7.76  435.31  8.5e-05       25.0%     53.34
  WD 6:  Seg 21   226-274      7.24  413.69  0.00017       27.5%     48.46
  WD 7:  Seg 25   278-317      6.65  389.34  0.00035       17.5%     44.82

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   15-53     -NKSYE----VTPSPADS-----ISSLSFSPRADILVATS-WDNQVRCWE
   WD 2   62-100    -ASAPK----ASISHDQP-----VLCSAWKDDGTTVFSGG-CDKQAKMWP
   WD 3  104-142    -GGQPV----TVAMHEGP-----IAAMAWIPGMNLLATGS-WDKTLKYWD
   WD 4  143-181    TRQ-QN----PVHTQQLP-----DKCYTLSVKHPLMVVGT-ADRNLIVFN
   WD 5  187-225    -TEFKR----IQSPLKYQ-----TRCVTAFPDQQGFLVGS-IEGRVGVHH
   WD 6  226-274    LDDSQQSKNFTFKCHRDGNDIYSVNSLNFHPVHGTFATAG-SDGAFNFWD
   WD 7  278-317    -KQRLK----AMSRCNQP-----IPCSSFNHDGSIYAYAACYDWSKGAEN

   WD40 Template    TGECLR----TLSGHTSG-----VTSVSFSPDGKRLVSGS-EDGTIKVWD