Input parameters:

  Query = AT2G01330.1 (Len=611)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G01330.1, Len=611):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAKLLETFPCVPSTERGRGILISGDSKSDTILYCNGRSVFIRSLRQLQDVQVYGEHGYAVTVARYSPNGEWIASADVSGT 80  
WD40-rpts      (___________________WD 1__________________)   (_________________WD 2____________

Query       81 VRVWGTHNGFVLKNEFRVLAGRVDDLQWSFDGLRIVASGDGKGKSLVRSFAWDSGNTMGDFDGHSRRVLSCAFKPTRPFR 160 
WD40-rpts      ____)(____________________WD 3____________________)   (_________________WD 4____

Query      161 IATCGEDFLVNFYDGPPFKFHSSHREHSNFVNCIRYSPDGTKFITVSSDKKGMIYDGKTGDKVGELASEDGHKGSIYAVS 240 
WD40-rpts      _____________)   (_________________WD 5________________)      (_________________

Query      241 WSPDSKRVLTVSADKSAKVWEVAEDGTIGSVIKTLSFMESGGAEDMLVGCLWQNDHLITVSLGGTMSLFSADDMDKPPLL 320 
WD40-rpts      WD 6________________)(______________________WD 7_____________________)    (_____

Query      321 LSGHIKNVTSLAVLGENQKTILSCSYDGLIVKWLKGVGYSCKLQMKDTKIKRLAATESSIFISGYDNMVWRIPLTDNGYG 400 
WD40-rpts      ____________WD 8_________________)(__________________WD 9__________________)   (

Query      401 AAEHVDIGHQPLDISIAVDSPEATALVSFDSGVVLLNGLNILSKIDLGFAVAASVISPDGKEAIVGGQDGKLHIYSVSGD 480 
WD40-rpts      ________________WD10________________)(_________________WD11________________)    

Query      481 NNLKEEAVLEKHRGALTVIRYSPDLTMFASGDANREAVVWDRETKQVKLNNMLFHTARINSLAWSPNNKMVATGSIDTCV 560 
WD40-rpts        (_________________WD12________________)(___________________WD13_______________

Query      561 IVYEVDKPASSRITARNAHLGGVNAVAFIDDCTVASSGEDASVRLWHIEPQ 611 
WD40-rpts      ___)     (________________WD14________________)    

14 WD40-repeats found in QUERY=AT2G01330.1 (Len=611):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-43       3.78  270.65  0.01394       10.0%     48.43
  WD 2:  Seg  5    47-85       8.89  481.92  2.0e-05       27.5%     55.09
  WD 3:  Seg  9    86-131      6.01  363.04  0.00080       17.5%     55.64
  WD 4:  Seg 13   135-174      7.67  431.56  9.5e-05       27.5%     55.87
  WD 5:  Seg 17   178-216      8.67  472.91  2.6e-05       22.5%     57.37
  WD 6:  Seg 21   223-261      8.73  475.27  2.4e-05       37.5%     45.91
  WD 7:  Seg 25   262-310      6.15  368.73  0.00067       17.5%     55.06
  WD 8:  Seg 29   315-354      7.45  422.50  0.00013       35.0%     53.11
  WD 9:  Seg 33   355-396      3.80  271.54  0.01356       10.0%     41.11
  WD10:  Seg 37   400-437      4.32  292.97  0.00699       25.0%     48.78
  WD11:  Seg 41   438-476      8.30  457.53  4.2e-05       25.0%     54.83
  WD12:  Seg 45   483-521      8.46  464.10  3.5e-05       30.0%     51.34
  WD13:  Seg 49   522-564      8.51  466.20  3.2e-05       27.5%     57.13
  WD14:  Seg 53   570-607      7.26  414.51  0.00016       25.0%     49.85

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-43     MAK---------LLETFPCVPSTERGRGILIS-G-DSKSD-TILYCN--G---RSVFIRS
   WD 2   47-85     -LQ---------DVQV----YGEHGYAVTVAR-Y-SPNGE-WIASADV-S---GTVRVWG
   WD 3   86-131    THN------GFVLKNE----FRVLAGRVDDLQ-W-SFDGL-RIVASGD-GKGKSLVRSFA
   WD 4  135-174    -GN---------TMGD----FDGHSRRVLSCA-F-KPTRPFRIATCGE-D---FLVNFYD
   WD 5  178-216    -FK---------FHSS----HREHSNFVNCIR-Y-SPDGT-KFITVSS-D---KKGMIYD
   WD 6  223-261    -VG---------ELAS----EDGHKGSIYAVS-W-SPDSK-RVLTVSA-D---KSAKVWE
   WD 7  262-310    VAEDGTIGSVIKTLSF----MESGGAEDMLVG-C-LWQND-HLITVSL-G---GTMSLFS
   WD 8  315-354    -DK---------PPLL----LSGHIKNVTSLAVL-GENQK-TILSCSY-D---GLIVKWL
   WD 9  355-396    KGV--------GYSCK----LQMKDTKIKRLA-A-TESSI-FISGYDNMV---WRIPLTD
   WD10  400-437    -GA---------AEHV----DIGHQPLDISIA-VDSPEAT-ALVSF---D---SGVVLLN
   WD11  438-476    -GL---------NILS----KIDLGFAVAASV-I-SPDGK-EAIVGGQ-D---GKLHIYS
   WD12  483-521    LKE----------EAV----LEKHRGALTVIR-Y-SPDLT-MFASGDA-N---REAVVWD
   WD13  522-564    RET------KQVKLNN----MLFHTARINSLA-W-SPNNK-MVATGSI-D---TCVIVYE
   WD14  570-607    -SS---------RITA----RNAHLGGVNAVA-F-IDDCT--VASSGE-D---ASVRLWH

   WD40 Template    TGE---------CLRT----LSGHTSGVTSVS-F-SPDGK-RLVSGSE-D---GTIKVWD