Input parameters:

  Query = AT2G01330.2 (Len=611)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G01330.2, Len=611):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAKLLETFPCVPSTERGRGILISGDSKSDTILYCNGRSVFIRSLRQLQDVQVYGEHGYAVTVARYSPNGEWIASADVSGT 80  
WD40-rpts      (___________________WD 1__________________)   (_________________WD 2____________

Query       81 VRVWGTHNGFVLKNEFRVLAGRVDDLQWSFDGLRIVASGDGKGKSLVRSFAWDSGNTMGDFDGHSRRVLSCAFKPTRPFR 160 
WD40-rpts      ____)(____________________WD 3____________________)   (_________________WD 4____

Query      161 IATCGEDFLVNFYDGPPFKFHSSHREHSNFVNCIRYSPDGTKFITVSSDKKGMIYDGKTGDKVGELASEDGHKGSIYAVS 240 
WD40-rpts      _____________)   (_________________WD 5________________)      (_________________

Query      241 WSPDSKRVLTVSADKSAKVWEVAEDGTIGSVIKTLSFMESGGAEDMLVGCLWQNDHLITVSLGGTMSLFSADDMDKPPLL 320 
WD40-rpts      WD 6________________)(______________________WD 7_____________________)    (_____

Query      321 LSGHIKNVTSLAVLGENQKTILSCSYDGLIVKWLKGVGYSCKLQMKDTKIKRLAATESSIFISGYDNMVWRIPLTDNGYG 400 
WD40-rpts      ____________WD 8_________________)(__________________WD 9__________________)   (

Query      401 AAEHVDIGHQPLDISIAVDSPEATALVSFDSGVVLLNGLNILSKIDLGFAVAASVISPDGKEAIVGGQDGKLHIYSVSGD 480 
WD40-rpts      ________________WD10________________)(_________________WD11________________)(___

Query      481 NNLKEEAVLEKHRGALTVIRYSPDLTMFASGDANREAVVWDRETKQVKLNNMLFHTARINSLAWSPNNKMVATGSIDTCV 560 
WD40-rpts      _________________WD12___________________)(___________________WD13_______________

Query      561 IVYEVDKPASSRITARNAHLGGVNAVAFIDDCTVASSGEDASVRLWHIEPQ 611 
WD40-rpts      ___)     (________________WD14________________)    

14 WD40-repeats found in QUERY=AT2G01330.2 (Len=611):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-43       3.54  260.96  0.01878       15.0%     44.32
  WD 2:  Seg  5    47-85       9.04  488.03  1.6e-05       27.5%     55.80
  WD 3:  Seg  9    86-131      6.16  369.02  0.00066       17.5%     56.82
  WD 4:  Seg 13   135-174      7.76  435.15  8.5e-05       27.5%     56.74
  WD 5:  Seg 17   178-216      8.75  476.28  2.4e-05       22.5%     59.64
  WD 6:  Seg 21   223-261      8.75  476.14  2.4e-05       37.5%     48.60
  WD 7:  Seg 25   262-310      6.27  373.56  0.00057       17.5%     55.24
  WD 8:  Seg 29   315-354      7.28  415.29  0.00016       35.0%     54.11
  WD 9:  Seg 33   355-396      4.05  282.07  0.00980       10.0%     42.32
  WD10:  Seg 37   400-437      3.69  266.89  0.01565       25.0%     45.32
  WD11:  Seg 41   438-476      8.48  465.15  3.3e-05       25.0%     57.62
  WD12:  Seg 45   477-521      8.25  455.39  4.5e-05       27.5%     57.40
  WD13:  Seg 49   522-564      8.52  466.64  3.2e-05       27.5%     58.26
  WD14:  Seg 53   570-607      7.35  418.13  0.00014       25.0%     51.38

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-43     MA-----K---------LLETFPCVPSTERGRG-IL-ISGDSKSDTILYCN-G---RSVFIRS
   WD 2   47-85     -L-----Q---------DVQVYG--EHGYAVTV-AR-YSPNGE-WIASADV-S---GTVRVWG
   WD 3   86-131    TH-----N------GFVLKNEFR--VLAGRVDD-LQ-WSFDGL-RIVASGD-GKGKSLVRSFA
   WD 4  135-174    -G-----N---------TMGDFD--GHSRRVLS-CA-FKPTRPFRIATCGE-D---FLVNFYD
   WD 5  178-216    -F-----K---------FHSSHR--EHSNFVNC-IR-YSPDGT-KFITVSS-D---KKGMIYD
   WD 6  223-261    -V-----G---------ELASED--GHKGSIYA-VS-WSPDSK-RVLTVSA-D---KSAKVWE
   WD 7  262-310    VA-----EDGTIGSVIKTLSFME--SGGAEDML-VG-CLWQND-HLITVSL-G---GTMSLFS
   WD 8  315-354    -D-----K---------PPLLLS--GHIKNVTSLAV-LGENQK-TILSCSY-D---GLIVKWL
   WD 9  355-396    KG-----V--------GYSCKLQ--MKDTKIKR-LA-ATESSI-FISGYDNMV---WRIPLTD
   WD10  400-437    -G-----A---------AEHVDI--GHQPLDIS-IAVDSPEAT-ALVSF---D---SGVVLLN
   WD11  438-476    -G-----L---------NILSKI--DLGFAVAA-SV-ISPDGK-EAIVGGQ-D---GKLHIYS
   WD12  477-521    VSGDNNLK---------EEAVLE--KHRGALTV-IR-YSPDLT-MFASGDA-N---REAVVWD
   WD13  522-564    RE-----T------KQVKLNNML--FHTARINS-LA-WSPNNK-MVATGSI-D---TCVIVYE
   WD14  570-607    -S-----S---------RITARN--AHLGGVNA-VA-FIDDCT--VASSGE-D---ASVRLWH

   WD40 Template    TG-----E---------CLRTLS--GHTSGVTS-VS-FSPDGK-RLVSGSE-D---GTIKVWD