Input parameters:

  Query = AT2G01470.1 (Len=393)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G01470.1, Len=393):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MANQSTETNQPSNMQTYGVPIYAADWIPEVDVRSKIIMDPEKSEDDDESSSSSSSSRSCIVLSGGGGEGRSGISNVILIC 80  
WD40-rpts                                        (_________________WD 1________________)       

Query       81 RVDLNTNSLSEQPLGRLVVGSDLPYRMAVHPREGGLICALPNSCKLFHWEDIMSREDNQAGESEEVIKELRDVGQQLALA 160 
WD40-rpts                (_________________WD 2_________________)          (__________________W

Query      161 FNPEGSVLAAGAEDGTLRVFKWPSMNTLLNESQAHSSVKCLTFSESGQFLVSLGGPVCRVWDVNASAAVASLSKEKDEMF 240 
WD40-rpts      D 3_________________)   (________________WD 4________________)   (______________

Query      241 ASCRFSVDSAGNEVLYIAANTERGGSIITCDTKLWKRKWSKPIKKNSISAFNVSADGKLLAIGTLEGDVLILESTRMQTI 320 
WD40-rpts      ______WD 5____________________)   (_________________WD 6________________)(______

Query      321 QVVKKAHLGLVTALTFSPDSRGLVSVSFDSRARLTMIEQKGDKPGVRWWLLVLLIVLLYVVAYYYMKAKGIIP 393 
WD40-rpts      _____________WD 7__________________)                                     

7 WD40-repeats found in QUERY=AT2G01470.1 (Len=393):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    35-73       7.33  417.51  0.00015       12.5%     31.93
  WD 2:  Seg  5    91-130      5.84  355.80  0.00100       12.5%     45.36
  WD 3:  Seg  9   141-181      7.94  442.54  6.8e-05       30.0%     53.85
  WD 4:  Seg 13   185-222      7.94  442.73  6.7e-05       32.5%     52.34
  WD 5:  Seg 17   226-271      5.87  357.17  0.00096       22.5%     47.54
  WD 6:  Seg 21   275-313      9.07  489.12  1.6e-05       17.5%     56.87
  WD 7:  Seg 25   314-356      8.63  471.02  2.8e-05       30.0%     53.21

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   35-73     -KI---IMDPEKS--EDDDE-SSSSSSSSRS------CI-VLSGGGGEGRSGI
   WD 2   91-130    -EQ---PLGRLVV--GSDLP-YRMAVHPREG------GLICALPNSCKLFHWE
   WD 3  141-181    -GE---SEEVIKELRDVGQQ-LALAFNPEGS------VL-AAGAEDGTLRVFK
   WD 4  185-222    -MN---TLLNESQ--AHSSV-KCLTFSESGQ------FL-VSLG-GPVCRVWD
   WD 5  226-271    -SA---AVASLSK--EKDEMFASCRFSVDSAGNEVLYIA-ANTERGGSIITCD
   WD 6  275-313    -WK---RKWSKPI--KKNSI-SAFNVSADGK------LL-AIGTLEGDVLILE
   WD 7  314-356    STRMQTIQVVKKA--HLGLV-TALTFSPDSR------GL-VSVSFDSRARLTM

   WD40 Template    TGE---CLRTLSG--HTSGV-TSVSFSPDGK------RL-VSGSEDGTIKVWD