Input parameters:

  Query = AT2G05720.1 (Len=276)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G05720.1, Len=276):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGPTELREARIEITKDFIKRAALRIQRENRRRNDPDEDKNAETKLALKHCKDMVLGSSKFGDDRPLTGCSLSRDGKILVT 80  
WD40-rpts                                                          (_________________WD 1______

Query       81 CSLSGVPKLWEVPQVTNKIVVLKGHKEHVTDVVFSSVDDECLATASTDRTEKIWKTDGTLLQTFKASSGFDSLARVWDLR 160 
WD40-rpts      __________)    (_________________WD 2_________________)                         

Query      161 TARNILIFQGHIKQVLSVDFSPNGYHLASGGEDNQCRIWDLRMRKLLYIIPAHVNLVSQVKYEPQERYFLATASHDMNVN 240 
WD40-rpts       (_________________WD 3________________)   (_________________WD 4_______________

Query      241 IWSGRDFSLVKSLVGHESKVASLDIAVDSSSRKCFA 276 
WD40-rpts      __)   (____________WD 5____________)

5 WD40-repeats found in QUERY=AT2G05720.1 (Len=276):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    53-91       9.11  490.96  1.5e-05       32.5%     54.33
  WD 2:  Seg  6    96-135      8.57  468.83  3.0e-05       37.5%     54.69
  WD 3:  Seg 12   162-200     10.44  545.93  2.7e-06       40.0%     53.90
  WD 4:  Seg 16   204-243      8.18  452.69  4.9e-05       22.5%     54.00
  WD 5:  Seg 19   247-276      3.26  249.18  0.02697       17.5%     36.31

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   53-91     MVLGSSKFGDDRPLTGCSLSR-DGKI-LVTCSLSGVPKLWE
   WD 2   96-135    TNKIVVLKGHKEHVTDVVFSSVDDEC-LATASTDRTEKIWK
   WD 3  162-200    ARNILIFQGHIKQVLSVDFSP-NGYH-LASGGEDNQCRIWD
   WD 4  204-243    RKLLYIIPAHVNLVSQVKYEP-QERYFLATASHDMNVNIWS
   WD 5  247-276    FSLVKSLVGHESKVASLDIAV-DSSS-RKCFA---------

   WD40 Template    GECLRTLSGHTSGVTSVSFSP-DGKR-LVSGSEDGTIKVWD