WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: AT2G16405.1    [Arabidopsis thaliana]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = AT2G16405.1 (Len=482)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G16405.1, Len=482):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEEKNGSSEVEIGEKDETKKQSKDLEFLSCMMQPKTADSDPHYIGIRRILLHRKADSGVISRRYDWRCNGKGYVAYRNFI 80  
WD40-rpts                                                                                      

Query       81 SKPRKWENLRTPSLLSSPGNSGRWLPSPSPLSHQFEAESFTSSRDLRSVNQVSSRRASFSSSLSDGDNSYRRGGVEHAYS 160 
WD40-rpts                                                                              (_______

Query      161 FVGMHCIFDQCKSSVTVLKFGHMSSDILAYGASDGSLTVCSLLEEPSVLKQLTGHSKDVTDFDFSSNNQYIASSSLDKTI 240 
WD40-rpts      _______________WD 1_____________________)    (_________________WD 2_____________

Query      241 RVWELSRGVCIRVIYGISPQYCIRFHPVNNNFLSAGNANKELTVFNFSTGRIIKKLLFEDEVTSMDHDHTGQIIFCGDGQ 320 
WD40-rpts      ___)   (_________________WD 3________________)   (________________WD 4__________

Query      321 GTVYSVSMDSHTGSLSRSHRHRTNHKSPVTTVKYRSFSLLASGPVLLTCTQDGNLSFFSVALQIKGYLTLRCSLKLAPRI 400 
WD40-rpts      ______)        (___________________WD 5___________________)          (__________

Query      401 HRIQASFCPLLSLEKGEYIVAGSEDSNVYFYDLTKPKHTCVNKLQGHRFPVMCVAWNHGENLLASSDFYGVVIVWKRAKT 480 
WD40-rpts      _________WD 6__________________)     (_________________WD 7________________)    

Query      481 SS 482 
WD40-rpts        



7 WD40-repeats found in QUERY=AT2G16405.1 (Len=482):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9   153-201      6.61  387.69  0.00037       25.0%     51.93
  WD 2:  Seg 13   206-244     10.03  529.18  4.6e-06       37.5%     53.32
  WD 3:  Seg 17   248-286      6.88  399.03  0.00026       17.5%     57.34
  WD 4:  Seg 21   290-327      6.95  401.59  0.00024       22.5%     56.16
  WD 5:  Seg 25   336-379      7.11  408.45  0.00019       25.0%     49.94
  WD 6:  Seg 29   390-432      6.86  398.10  0.00027       22.5%     51.49
  WD 7:  Seg 33   438-476      8.79  477.90  2.3e-05       27.5%     51.29
Multiple sequence alignment of 7 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1  153-201    GGVEHAYSFVGMHCIFDQCK----SSVTVLKFG-----HMSSDILAYGASDGSLTVCS
   WD 2  206-244    -P--------SVLKQLTGHS----KDVTDFDFS-----S-NNQYIASSSLDKTIRVWE
   WD 3  248-286    -G--------VCIRVIYGIS----PQYCIRFHP-----V-NNNFLSAGNANKELTVFN
   WD 4  290-327    -G--------RIIKKLL-FE----DEVTSMDHD-----H-TGQIIFCGDGQGTVYSVS
   WD 5  336-379    -S--------RSHRHRTNHK----SPVTTVKYRSFSLLA-SGPVLLTCTQDGNLSFFS
   WD 6  390-432    -L--------RCSLKLAPRIHRIQASFCPLLSL-----E-KGEYIVAGSEDSNVYFYD
   WD 7  438-476    -H--------TCVNKLQGHR----FPVMCVAWN-----H-GENLLASSDFYGVVIVWK

   WD40 Template    TG--------ECLRTLSGHT----SGVTSVSFS-----P-DGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019