Input parameters:
Query = AT2G16405.1 (Len=482)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (AT2G16405.1, Len=482):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MEEKNGSSEVEIGEKDETKKQSKDLEFLSCMMQPKTADSDPHYIGIRRILLHRKADSGVISRRYDWRCNGKGYVAYRNFI 80
WD40-rpts
Query 81 SKPRKWENLRTPSLLSSPGNSGRWLPSPSPLSHQFEAESFTSSRDLRSVNQVSSRRASFSSSLSDGDNSYRRGGVEHAYS 160
WD40-rpts (_______
Query 161 FVGMHCIFDQCKSSVTVLKFGHMSSDILAYGASDGSLTVCSLLEEPSVLKQLTGHSKDVTDFDFSSNNQYIASSSLDKTI 240
WD40-rpts _______________WD 1_____________________) (_________________WD 2_____________
Query 241 RVWELSRGVCIRVIYGISPQYCIRFHPVNNNFLSAGNANKELTVFNFSTGRIIKKLLFEDEVTSMDHDHTGQIIFCGDGQ 320
WD40-rpts ___) (_________________WD 3________________) (________________WD 4__________
Query 321 GTVYSVSMDSHTGSLSRSHRHRTNHKSPVTTVKYRSFSLLASGPVLLTCTQDGNLSFFSVALQIKGYLTLRCSLKLAPRI 400
WD40-rpts ______) (___________________WD 5___________________) (__________
Query 401 HRIQASFCPLLSLEKGEYIVAGSEDSNVYFYDLTKPKHTCVNKLQGHRFPVMCVAWNHGENLLASSDFYGVVIVWKRAKT 480
WD40-rpts _________WD 6__________________) (_________________WD 7________________)
Query 481 SS 482
WD40-rpts
7 WD40-repeats found in QUERY=AT2G16405.1 (Len=482):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 9 153-201 6.61 387.69 0.00037 25.0% 51.93
WD 2: Seg 13 206-244 10.03 529.18 4.6e-06 37.5% 53.32
WD 3: Seg 17 248-286 6.88 399.03 0.00026 17.5% 57.34
WD 4: Seg 21 290-327 6.95 401.59 0.00024 22.5% 56.16
WD 5: Seg 25 336-379 7.11 408.45 0.00019 25.0% 49.94
WD 6: Seg 29 390-432 6.86 398.10 0.00027 22.5% 51.49
WD 7: Seg 33 438-476 8.79 477.90 2.3e-05 27.5% 51.29
Multiple sequence alignment of 7 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 153-201 GGVEHAYSFVGMHCIFDQCK----SSVTVLKFG-----HMSSDILAYGASDGSLTVCS
WD 2 206-244 -P--------SVLKQLTGHS----KDVTDFDFS-----S-NNQYIASSSLDKTIRVWE
WD 3 248-286 -G--------VCIRVIYGIS----PQYCIRFHP-----V-NNNFLSAGNANKELTVFN
WD 4 290-327 -G--------RIIKKLL-FE----DEVTSMDHD-----H-TGQIIFCGDGQGTVYSVS
WD 5 336-379 -S--------RSHRHRTNHK----SPVTTVKYRSFSLLA-SGPVLLTCTQDGNLSFFS
WD 6 390-432 -L--------RCSLKLAPRIHRIQASFCPLLSL-----E-KGEYIVAGSEDSNVYFYD
WD 7 438-476 -H--------TCVNKLQGHR----FPVMCVAWN-----H-GENLLASSDFYGVVIVWK
WD40 Template TG--------ECLRTLSGHT----SGVTSVSFS-----P-DGKRLVSGSEDGTIKVWD